BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G34670.1
Length=1098
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473608 jgi|Araly1|473608|fgenesh2_kg.1__3562__AT1G34670.1 1796 0.0
Ahg488535 jgi|Araly1|488535|fgenesh2_kg.6__1669__AT5G16770.1 241 1e-62
> Ahg473608 jgi|Araly1|473608|fgenesh2_kg.1__3562__AT1G34670.1
Length=1104
Score = 1796 bits (972), Expect = 0.0
Identities = 1063/1106 (96%), Gaps = 10/1106 (1%)
Strand=Plus/Plus
Query 1 ATGGGGAGGTCGCCTTGTTGCGACGAGAATGGTCTAAAGAAAGGGCCATGGACTCCTGAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGGAGGTCGCCTTGTTGCGACGAGAATGGTCTAAAGAAAGGGCCATGGACTCCTGAA 60
Query 61 GAAGATCAAAAGCTTATTGATTACATTCATAAACATGGTCATGGAAGCTGGAGAGCTCTC 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 GAAGATCAAAAGCTTATTGATTACATTCATAAACATGGTCATGGAAGCTGGAGAGCCCTC 120
Query 121 CCCAAGCTCGCAGATTTGAATAGGTGTGGAAAGAGTTGTAGACTGAGGTGGACAAATTAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCCAAGCTCGCAGATTTGAATAGGTGTGGAAAGAGTTGTAGACTGAGGTGGACAAATTAT 180
Query 181 TTGAGACCAGACATCAAAAGAGGAAAGTTTTCAGCCGAAGAAGAGCAAACAATCCTCCAT 240
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 181 TTGAGACCAGACATCAAAAGAGGCAAGTTTTCCTCCGAAGAAGAGCAAACAATCCTCCAT 240
Query 241 CTCCACTCCATTCTCGGGAATAAATGGTCAGCTATTGCGACGCATTTGCAAGGTCGTACA 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 CTCCACTCCATTCTCGGGAATAAATGGTCAGCTATTGCCACGCATTTGCAAGGTCGTACA 300
Query 301 GATAATGAGATAAAAAACTTTTGGAACACACATCTAAAGAAGAAATTGATCCAGATGGGG 360
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GATAATGAGATCAAAAACTTTTGGAACACACATCTAAAGAAGAAATTGATCCAGATGGGA 360
Query 361 ATCGATCCTGTGACTCATCAGCCAAGAACCGACCTCTTCGCAAGTTTACCTCAGCTCATA 420
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 ATCGATCCCGTGACTCATCAGCCAAGAACCGACCTCTTCGCAAGCTTACCTCAGCTCATA 420
Query 421 GCCTTGGCAAATCTAAAAGACCTAATCGAACAAACATCACAATTCTCATCCATGCAAGGC 480
||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||| |
Sbjct 421 GCCTTGGCAAATCTAAAAGACCTGATCGAACAAACATCACAATTTTCATCCATTCAAGCC 480
Query 481 GAAGCAGCCCAACTAGCCAATCTACAATATCTCCAACGTATGTTTAATTCTTCGGCTTCA 540
|||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||
Sbjct 481 GAAGCAGCCCAACTAGCCAAGCTACAATATCTCCAATGTATGCTTAATTCTTCGGCTTCA 540
Query 541 TTAACCAACAACAACGGCAACAATTTTAGCCCGAGTAGTATTCTCGATATCGATCAGCAC 600
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 541 TTAACCAACAACAACAGCAACAACAATAGCCCGAGTAGTATTCTCGATATCGATCAGAAC 600
Query 601 CATGCCATGAACCTCTTAAACTCCATGGTCTCTTGGAACAAAGATCAAAACCCCG-CTTT 659
|||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||
Sbjct 601 CATGCCATGAACCTCTTAAACTCCATGGTCTCTTGGAACAAAGATCAACA-CCCGACTTT 659
Query 660 TGATCCGGTTCTTGAACTCGAGGCTAACGATCAAAATCAAGATTTATTTCCACTAGGGTT 719
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 660 TGATCCGGTTCTTGAACTCGAGGATAACAATCAAAATCAAGATTTATTTCCACTAGGGTC 719
Query 720 TATCATTGAT-CAACCCACCCAACCACTCCAACAACAAAAATACCATTTAAACAATAGTC 778
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TATCATTGATCCAA-CCACCCAACCACTCCAACAACAAAAATACCATTTAAACAATAGTC 778
Query 779 CTAG---T---GAGCTACCATCGCAAGGTGACCCACTTCTTGATCATGTCCCTTTCAGTC 832
|||| | ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 779 CTAGTCCTAGGGAGCTACCATCACAAGGTGACCCACTTCTTGATCATGTCCCTTTCAGTC 838
Query 833 TCCAAACACCTTTGAATAGTGAGGATCACTTTATAGATAATTTGGTCAAACATCCAACTG 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TCCAAACACCTTTGAATAGTGAGGATCACTTTATAGATAATTTGGTCAAACATCCAACTG 898
Query 893 ATCATGAGCATGAACATGATGACAATCCATCTTCATGGGTTCTCCCTTCTCTTATAGACA 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 ATCATGAGCATGAACATGATGACAATCCATCTTCATGGGTTCTCCCTTCTCTTATAGACA 958
Query 953 ATAACCCTAAAACTGTCACGTCTTCTCTTCCACACAACAATCCGGCGGATGCAAGTAGCA 1012
| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 ACAACCCTAAAAATGCCACGTCTTCTCTTCCACACAACAATCCGGCGGATGCAAGTAGCA 1018
Query 1013 GCTCAAGCTATGGAGGTTGTGAAGCTGCGTCGTTTTATTGGCCTGACATTTGCTTCGACG 1072
|||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||
Sbjct 1019 GCTCAAGCTATGGAGGTTGTGACGCTGCGTCATTTTATTGGCCTGACTTTTGCTTCGACG 1078
Query 1073 AAAGCCTCATGAACGTTATATCTTAG 1098
||||||||||||||||||| ||||||
Sbjct 1079 AAAGCCTCATGAACGTTATTTCTTAG 1104
> Ahg488535 jgi|Araly1|488535|fgenesh2_kg.6__1669__AT5G16770.1
Length=1248
Score = 241 bits (130), Expect = 1e-62
Identities = 321/410 (78%), Gaps = 25/410 (6%)
Strand=Plus/Plus
Query 1 ATGGGGAGGTCGCCTTGTTGCGACGAGAATGGTCTAAAGAAAGGGCCATGGACTCCTGAA 60
|||||| | || || |||||||| ||||||||||||||||||||||||||||| | ||
Sbjct 64 ATGGGGCGTTCACCATGTTGCGATGAGAATGGTCTAAAGAAAGGGCCATGGACACAAGAG 123
Query 61 GAAGATCA-AAAGCTTATTGATTACATTCATAA-ACATGGTCATGGAAGCTGGAGAGCTC 118
|| ||| | ||| || |||||| ||||||| || |||||| ||||| |||||||||||||
Sbjct 124 GAGGATGAGAAA-CTGATTGATCACATTCA-AACACATGGCCATGGCAGCTGGAGAGCTC 181
Query 119 TCCCCAAGCTCGCAGATTTGAATAGGTGTGGAAAGAGTTGTAGACTGAGGTGGACAAATT 178
| || |||| || | ||| || | || ||||||||||||||| |||| ||||| || |
Sbjct 182 TTCCGAAGCAAGCCGGTTTAAACCGATGCGGAAAGAGTTGTAGATTGAGATGGACTAACT 241
Query 179 ATTTGAGACCAGACATCAAAAGAGGAAAGTTTTCAGCCGAAGAAGA-G--CAAACAATCC 235
| |||||||| |||||||| |||||||| ||| || | ||||| || | ||||||||
Sbjct 242 ACTTGAGACCTGACATCAAGAGAGGAAA-TTT-CA-CTGAAGAGGAAGAACAAACAATTA 298
Query 236 TCCATCTCCACTCCATTCTCGGGAATAAATGGTCAG-CTATTGCGACGC-A-T-TTGCAA 291
|| | ||||| ||| |||| || || || ||||| | | || || || | | || |
Sbjct 299 TCAACCTCCATTCCCTTCTTGGAAACAAGTGGTC-GTCGATAGC--CGGTAATCTTCCT- 354
Query 292 GGTCGTACAGATAATGAGATAAAAAACTTTTGGAACACACATCTAAAGAA-GAAA-TTGA 349
|| | || || ||||| |||||||||| ||||||||||||| | | ||| |||| ||
Sbjct 355 GGAAGAACGGACAATGAAATAAAAAACTATTGGAACACACATTTGA-GAAAGAAACTTC- 412
Query 350 TCCAGATGGGGATCGATCCTGTGACTCATCAG-CCAAGAACCGACC-TCT 397
|||| |||||||| ||||| ||||| ||| || ||||||||||||| |||
Sbjct 413 TCCAAATGGGGATTGATCCGGTGACCCAT-AGGCCAAGAACCGACCATCT 461
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40905889941
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5