BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G34750.1
Length=1515
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473609 jgi|Araly1|473609|fgenesh2_kg.1__3563__AT1G34750.1 1914 0.0
> Ahg473609 jgi|Araly1|473609|fgenesh2_kg.1__3563__AT1G34750.1
Length=1386
Score = 1914 bits (1036), Expect = 0.0
Identities = 1181/1248 (95%), Gaps = 22/1248 (2%)
Strand=Plus/Plus
Query 9 AAACAAGAGGACAAAGCCAGAGCGACTCTGCTTTTAAGACACGGCAAAAAAGTCAACCAA 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAACAAGAGGACAAAGCCAGAGCGACTCTGCTTTTAAGACACGGCAAAAAAGTCAACCAA 60
Query 69 CG-AACCCAATAACAAGGAAAGAGATTTGTTTTTCATTTCTAATGG-------aaaa--a 118
|| |||||||||||||||||||||||||||||||||||| |||||| |||| |
Sbjct 61 CGAAACCCAATAACAAGGAAAGAGATTTGTTTTTCATTTTTAATGGAAAAAAAAAAACCA 120
Query 119 aaaCAGCAAAAATTGAAGTCTACTCGTCGTAGTAGTCGTCGTCTTCCACTAATTCCGTGG 178
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 121 AAACAGCAAAAATTGAAGTCTACTCGTCGTCGTCGTCGTCGTCTTCCACTAATTCCGTGG 180
Query 179 tttttttATCGAAGACTTTTGAATAAAGTACATTTGCAGAGTCTGTCAATAACCCTTTCT 238
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 181 --TTTTTATCGAAGACTTTTGAATAAAGTACATTTGCAGAGTCTATCAATAACCCTTTCG 238
Query 239 TCACGGTATTGCTCTCAAGCCGCGTACTGGTAGGCTCCAAAATTATCCCTTCTTTATGGT 298
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 239 TCACGGTATTGCTCTCAAGCCGCGTACTGGTAGACTCCAAAATTATCCTTTCTTTATGGT 298
Query 299 TTTTGGAACCTGGGTTCTCCGATTTTGAGGT--TGTTGAAATCTTTGAGTAGATTTTTG- 355
|||||||| |||||||||||||||||||||| | |||||||| |||| ||| |
Sbjct 299 TTTTGGAATCTGGGTTCTCCGATTTTGAGGTAATCTTGAAATC-TTGA-AAGAGAAGAGA 356
Query 356 TGGA-ACATCTGA--CTCTCATGGCGAAGTTATGTTGCTTCGGTTCTTCAGACTACGATC 412
| | |||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 T-CAGACATCT-ATCCTCTCATGGCGAAGTTATGTTGCTTCGGTTCTTCAGACTACGATC 414
Query 413 TTGTGGTTGGGAGGGCATCGACTAGTTCTGGAAAAGGGAGAAATAACGACGGCGAGATTA 472
|||||||||||||||| || ||||||||||||||||||| ||||| |||||||||||| |
Sbjct 415 TTGTGGTTGGGAGGGCGTCAACTAGTTCTGGAAAAGGGAAAAATAGCGACGGCGAGATCA 474
Query 473 AATTCGGTTACAGCTTAGTGAAAGGGAAAGCTAATCATCCAATGGAGGATTATCATGTGT 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 AATTCGGTTACAGCTTAGTGAAAGGGAAAGCTAATCATCCAATGGAGGATTATCATGTGT 534
Query 533 CTAAATTCGTGAAAATAGACGGTAACGAGCTCGGTTTGTTTGCAATCTACGATGGTCATT 592
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 535 CTAAATTCGTGAAAATAGACGGTAGCGAGCTCGGTTTGTTTGCAATCTACGATGGTCATT 594
Query 593 TGGGTGAACGTGTTCCTGCTTATCTACAGAAGCATTTGTTCTCCAATATCCTCAAAGAGG 652
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 595 TGGGTGAACGTGTTCCTGCTTATCTACAGAAGCATTTGTTCTCCAATATCCTTAAAGAGG 654
Query 653 AGCAGTTTAGGTATGATCCTCAGAGATCAATAATTGCTGCCTATGAGAAGACAGACCAAG 712
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 655 AGCAATTTAGGTATGATCCTCACAGATCAATAATTGCTGCCTATGAGAAGACAGACCAAG 714
Query 713 CCATTCTGTCACATTCTTCTGACTTAGGCCGTGGTGGCTCAACGGCTGTAACCGCTATTC 772
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 715 CCATTCTGTCACATTCTTCTGACTTAGGCCGTGGTGGTTCAACCGCTGTAACCGCTATTC 774
Query 773 TGATGAATGGACGGCGTTTATGGGTGGCAAATGTGGGTGATTCTCGGGCGGTTCTATCTC 832
||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||
Sbjct 775 TGATGAATGGACGGCGTTTGTGGGTGGCAAATGTGGGTGATTCCCGGGCGGTTTTATCTC 834
Query 833 AAGGAGGTCAGGCAATACAGATGACTATTGATCATGAGCCGCACACTGAAAGGTTGAGCA 892
||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 835 AAGGAGGTCAGGCTATACAGATGACTATCGATCACGAGCCGCACACTGAAAGGTTGAGCA 894
Query 893 TCGAGGGTAAAGGAGGCTTTGTATCCAACATGCCAGGAGATGTCCCTCGGGTTAACGGGC 952
|||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 895 TCGAGGATAGAGGAGGCTTTGTATCGAACATGCCAGGAGATGTCCCTCGGGTTAACGGGC 954
Query 953 AGCTAGCGGTTTCTCGTGCTTTTGGAGACAAAAGCCTCAAAACACATCTACGGTCAGATC 1012
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 955 AGCTAGCGGTTTCTCGTGCGTTTGGGGACAAAAGCCTCAAAACACATCTACGGTCAGATC 1014
Query 1013 CTGACGTTAAAGATTCATCGATCGATGATCACACAGATGTTCTTGTTCTTGCTAGTGACG 1072
| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1015 CAGACGTTAAAGATTCATCTATAGATGATCACACAGATGTTCTTGTTCTTGCTAGTGACG 1074
Query 1073 GTCTATGGAAGGTGATGGCTAACCAAGAGGCGATTGATATTGCGAGAAGAATCAAAGATC 1132
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1075 GTCTATGGAAGGTGATGGCTAACCAAGAGGCGATTGATATCGCGAGAAGAATCAAAGATC 1134
Query 1133 CATTGAAAGCAGCGAAAGAACTAACAACCGAAGCGCTTAGAAGAGACAGTAAAGATGATA 1192
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1135 CACTGAAAGCAGCGAAAGAACTAACAACCGAAGCGCTGAGAAGAGACAGTAAAGACGATA 1194
Query 1193 TTTCTTGCATTGTCGTCAGATTAAGGTGATGAAAGATCTTTTGAAACC 1240
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 TTTCTTGCATTGTCGTCAGATTAAGGTGATGAAAGATCTTTTGAAACC 1242
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56716374805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5