BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G34760.1
Length=1027
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473646 jgi|Araly1|473646|fgenesh2_kg.1__3600__AT1G34760.2 1166 0.0
> Ahg473646 jgi|Araly1|473646|fgenesh2_kg.1__3600__AT1G34760.2
Length=991
Score = 1166 bits (631), Expect = 0.0
Identities = 761/820 (93%), Gaps = 24/820 (3%)
Strand=Plus/Plus
Query 1 AGAACAAAAGTCTCAATTCgagagag---a-ag-agaga-aaggagaagctatggagaac 54
|||||||||||||||||||||||||| | || ||||| || ||||||||||||||||
Sbjct 1 AGAACAAAAGTCTCAATTCGAGAGAGAAAAGAGAAGAGAGAAAGAGAAGCTATGGAGAAG 60
Query 55 gagagagCGAAGCAAGTGTACTTGGCGAAACTCAACGAGCAAGCTGAGAGATACGATGAG 114
||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 GAGAGAGAGAATCAAGTGTACTTGGCCAAACTCAACGAGCAAGCTGAGAGATACGATGAG 120
Query 115 ATGGTTGAAGCAATGAAGAAAGTTGCAGCTCTTGATGTAGAGCTCACCATTGAAGAGAGG 174
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 121 ATGGTTGAAGCAATGAAGAAAGTTGCAGCTCTTGATGTGGAGCTCACAATTGAAGAGAGG 180
Query 175 AATCTTTTATCTGTTGGTTACAAAAATGTGATTGGTGCTAGGAGAGCATCGTGGAGGATC 234
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 AATCTTTTATCTGTTGGTTACAAAAATGTGATTGGTGCTAGGAGAGCGTCGTGGAGGATC 240
Query 235 CTTTCTTCGATCGAGCAGAAAGAAGAATCGAAAGGAAACGAACAAAATGCCAAGAGGATT 294
||||||||||| ||||||||||||| ||||| ||||||||||||||||| |||||||||
Sbjct 241 CTTTCTTCGATTGAGCAGAAAGAAGTATCGAGGGGAAACGAACAAAATGCAAAGAGGATT 300
Query 295 AAGGATTACAGGACAAAAGTTGAAGAAGAACTCTCCAAGATTTGTTACGATATTTTGGCT 354
||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 301 AAGGATTACAGGACAAAGGTTGAAGAAGAGCTCTCCAAGATCTGTTACGATATTTTGGCT 360
Query 355 GTCATCGATAAGCATCTTGTCCCATTCGCAACTTCGGGAGAATCCACCGTCTTCTACTAC 414
||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 361 GTCATAGATAAGCATCTTGTCCCATCCGCAACTTCGGGAGAATCCACGGTCTTCTACTAC 420
Query 415 AAAATGAAAGGAGATTATTTCAGATACTTGGCTGAATTTAAGTCCGGTGCTGATCGCGAG 474
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAGATGAAAGGAGATTATTTCAGATACTTGGCTGAATTTAAGTCCGGTGCTGATCGCGAA 480
Query 475 GAAGCTGCGGACCTATCACTCAAGGCGTATGAAGCTGCAACGAGTTCTGCTAGCACGGAA 534
||||||||||||| ||||||||||||||||||||||||||||| ||| |||||| |||||
Sbjct 481 GAAGCTGCGGACCAATCACTCAAGGCGTATGAAGCTGCAACGACTTCAGCTAGCTCGGAA 540
Query 535 TTGTCTACAACACATCCAATAAGACTCGGCTTGGCTCTCAACTTTTCTGTCTTCTACTAC 594
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 541 TTATCTACAACACATCCAATAAGACTCGGCTTGGCTCTCAACTTTTCTGTATTCTACTAC 600
Query 595 GAGATCTTGAATTCTCCGGAAAGAGCATGTCATTTGGCAAAGCGAGCGTTTGATGAAGCA 654
|||||||||||||| || | || | | | | | |||||||||||| |||
Sbjct 601 GAGATCTTGAATTCACC--A--GA--A---C----G-C---GT-AGCGTTTGATGAGGCA 642
Query 655 ATCGCTGAGCTTGACAGTCTTAACGAAGATTCATACAAGGACAGCACACTTATCATGCAA 714
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 ATCACTGAGCTTGACAGTCTTAACGAAGATTCATACAAGGACAGCACACTTATCATGCAA 702
Query 715 CTTCTCAGAGATAACCTCACTTTATGGACCTCTGATCTAGAGGAAGGAGGTGAACAATCT 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 CTTCTCAGAGATAACCTCACTTTATGGACCTCTGATCTAGAGGAAGGAGGTGAACAATCT 762
Query 775 AAAGGCCATAATCAACAAGATGAGGTAAACAAAATCTAAA 814
||||||||||| | |||||| ||||||||||| |||||||
Sbjct 763 AAAGGCCATAACCCACAAGACGAGGTAAACAAGATCTAAA 802
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38199162834
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5