BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G34770.1
Length=948
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313998 jgi|Araly1|313998|fgenesh1_pm.C_scaffold_1002778 702 0.0
> Ahg313998 jgi|Araly1|313998|fgenesh1_pm.C_scaffold_1002778
Length=750
Score = 702 bits (380), Expect = 0.0
Identities = 430/454 (95%), Gaps = 3/454 (1%)
Strand=Plus/Plus
Query 70 ATGGCCGACGAAGAAGATTCTCTCTCTCAATTCGATATATCCAAAGAGGAAACGGATAAG 129
||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGCTGACGAAGAAGACCCTCTCTCTCAATTTGATATATCCAAAGAGGAAACGGATAAG 60
Query 130 TTAGTTTCAGAGGTGATTAGATTCATACTGTTCAAGTTTCACCAAAGCTCAGGAACTCCA 189
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 TTAGTTTCAGAGGTGATTAGATTCATACTATTCAAGTTTCACCAAAGCTCAGGAACTCCA 120
Query 190 ATTAAAAGAGAAGATTTGACTCAGATTGTTACTAAGAACTATCGTCAACGAAATCTCGCT 249
|||||||||||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 121 ATTAAAAGAGAAGATTTGACTCAGATTGTTACTAAGAACTATCGGCAGCGTAATCTCGCC 180
Query 250 ACACACGTGATTAACGAAGCGAAGAAGAAGCTCTCTAATGTCTTTGGTTATGATTTGAAA 309
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 181 ACACACGTGATTAACGAAGCGAAGAAGAAGCTTTCTAATGTGTTTGGTTATGATTTGAAA 240
Query 310 GAACTTCAACGTGCTCGTTCTTCTTCTACTGGTCAATC---TAGGCTTCCTCAGTCACAG 366
|| |||||||||||||| ||||||||| ||||||||| |||||||||||||||||||
Sbjct 241 GAGCTTCAACGTGCTCGGGCTTCTTCTAATGGTCAATCTAGTAGGCTTCCTCAGTCACAG 300
Query 367 AGTTCTGTTGACTCGAAATCGTATGTGCTTGTTAGTGAATTGCCGTTGGAAGTGTTTAAG 426
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 301 AGTTCTGTTGACTCGAAATCGTATGTGCTTGTTAGTGAATTGCCGTTGGAAGTGTTTAGG 360
Query 427 AAACATGTTGTGGATGAAACCACGAGTCCTGTGACTGGCTTTACGTTTGTGGTTCTTGCC 486
|||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||
Sbjct 361 AAACATGTTGTGGATGAAACTACGAGTCCTATGACTGGCTTCACGTTTGTGGTTCTTGCT 420
Query 487 ATTGTGCAGCTTGCAGGTGGTAAAATCCCTGAAG 520
||||||||||||||||| ||||||||||||||||
Sbjct 421 ATTGTGCAGCTTGCAGGAGGTAAAATCCCTGAAG 454
Score = 420 bits (227), Expect = 1e-116
Identities = 251/263 (95%), Gaps = 0/263 (0%)
Strand=Plus/Plus
Query 521 AAACCCTTTGGCATCATTTGAAGCGAATGGGATTGCATGAAAATGATGAGCATAATCCTG 580
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 488 AAACCCTTTGGCATCATTTGAAGCGAATGGGATTGCACGAAAGTGATGAGCATAATCCTG 547
Query 581 TGTTTGGGAACAACAAGCAGACCCTGGAGACATTAGTCCAACAAAGGTTCTTGCAGAAGG 640
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 548 TGTTTGGGAACAACAAGCAGACCCTGGAGACATTAGTCCAACAAAGGTACTTGCAGAAGG 607
Query 641 AGAAAGTAAGTGGCCCTGAGGGTAGTACTTTGTTTTACGATCTTGCAGAGAGAGCGCTAG 700
|||||||||||||||| ||||||| |||| |||||||||||||||| ||||||||| |||
Sbjct 608 AGAAAGTAAGTGGCCCAGAGGGTAATACTCTGTTTTACGATCTTGCTGAGAGAGCGTTAG 667
Query 701 ATCCTCAAGTTAGCGAGAAAGTAAAAGATTACATTTCACAGATCCTTAAGAATGATGTAG 760
|||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 668 ATCCACAAGTTAGCGAGAAAGTAAAAGATTACATTTCTCAGATCCTGAAGAATGATGTAG 727
Query 761 CAGTTGTAGAGCTTAATGATTAG 783
|||||||||||||| ||||||||
Sbjct 728 CAGTTGTAGAGCTTGATGATTAG 750
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35187452391
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5