BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G34780.1
Length=1456
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473651 jgi|Araly1|473651|fgenesh2_kg.1__3605__AT1G34780.1 1609 0.0
Ahg942571 jgi|Araly1|942571|scaffold_603115.1 411 1e-113
> Ahg473651 jgi|Araly1|473651|fgenesh2_kg.1__3605__AT1G34780.1
Length=1392
Score = 1609 bits (871), Expect = 0.0
Identities = 1043/1123 (93%), Gaps = 23/1123 (2%)
Strand=Plus/Plus
Query 329 AGGGTTCCGTTTTGTGCTACGAAATCTGCTAAAGATTCAATCTTTGGGCTTCGAGATCAG 388
|||||||||||||||||||||| |||| ||||||||| ||||||||| |||||||||||
Sbjct 291 AGGGTTCCGTTTTGTGCTACGAGGTCTGTTAAAGATTCCATCTTTGGGTTTCGAGATCAG 350
Query 389 ACTTGTTCTGTTTCTGGTGTTGAATCAGACGAGCGTCCTCGTTTTGTTGCTGTCACCGAG 448
|||||| ||||||||||||||||||||||||||||||||| ||||| ||| |||||||||
Sbjct 351 ACTTGTCCTGTTTCTGGTGTTGAATCAGACGAGCGTCCTCATTTTGGTGCCGTCACCGAG 410
Query 449 GGTGATGAGCGTTGGTTGCAAATAGCATTGGATATGATTCATAAGAACAAGTGTGATTAT 508
||||||||||||||||||||| | || |||||||| ||||||||||| ||||||||||||
Sbjct 411 GGTGATGAGCGTTGGTTGCAATTGGCTTTGGATATAATTCATAAGAATAAGTGTGATTAT 470
Query 509 GTGGCTTTGCTTTTCTATGCATCATGGTGTCCATTCTCAAGGTCATTTAGACCGAGTTTC 568
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 471 GTGGCTTTGCTTTTCTATGCATCATGGTGTCCATTTTCAAGGTCATTTAGACCGAGTTTC 530
Query 569 GATGTTATCT-CTTCTCTCTATTCCTCCATTCCTCATTTTGCCATTAAGGAATCATCCAT 627
|||||||| | |||||||||||||||| |||||||||||||| ||||||||||||||| |
Sbjct 531 GATGTTAT-TGCTTCTCTCTATTCCTCGATTCCTCATTTTGCGATTAAGGAATCATCCGT 589
Query 628 TAAGCCTAGCACCCTTTCCAAGTATGGAGTTCATGGGTTTCCCACTCTCTTACTTTTGAA 687
|||||| || |||||||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct 590 TAAGCCGAGTACCCTTTCTAAGTATGGAGTTCATGGGTTTCCCACTCTTTTGCTTTTGAA 649
Query 688 TTCGACAATGCGGGCACGATACCGAGGAACCCGAATGCTTGATTCTCTTGTTGCTTTCTA 747
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 650 TTCGACAATGCGGGCACGATACCGAGGAACCAGAATGCTTGATTCTCTTGTTGCTTTCTA 709
Query 748 CAGTGATGTTACCGGCATTGAGACATTGGATAAAACTTCTCTCGAGAGAAGCGTATCAGT 807
||||||||||||||| || || || ||||||||||||||||| || | ||||||||||||
Sbjct 710 CAGTGATGTTACCGGTATAGAAACGTTGGATAAAACTTCTCTTGACAAAAGCGTATCAGT 769
Query 808 TCCTCATCTCGGTAACGAAAACAACACAGAGCCAGAAAACTGTCCATTCACGTGGGCAAG 867
|||||||||||| ||| |||||||||| |||||||||||||| |||||||| ||||||||
Sbjct 770 TCCTCATCTCGGGAACCAAAACAACACCGAGCCAGAAAACTGCCCATTCACATGGGCAAG 829
Query 868 ATCGCCTGAGAATATGCTTCGACAAGAGACCTATCTAGCTCTTGCCATTGTATTCGTCCT 927
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 830 ATCACCTGAGAATATGCTTCGACAAGAGACCTATCTGGCTCTTGCCATTGTATTCGTCCT 889
Query 928 GTTGAGATTGCTTCACTTGATATATCCTACACTCGTCGTGTTTATGAAGTTCACTTGGAG 987
||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 890 GTTAAGATTGCTTCACTTGATATACCCTACACTCGTCGTGTTTATGAAATTCACTTGGAG 949
Query 988 ACGGATTGCTCAGAACATGAGACTAGAAAGCCTGCTAGAACATACCGTCGGGTTTCTAAG 1047
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 950 ACGGATTGCTCAGAACATGAGACTGGAAAGCCTGCTAGAACATACCGTCGGGTTTCTAAG 1009
Query 1048 CCGAGCTGTACAATTATGCATGCATAGAAGAAGCAATCTGCAGGGAGGGGCTATGAACGC 1107
|||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||
Sbjct 1010 CCGAGCTGTACAATTATGCATGCACAGAAGAAGCAATCTGCAGGGAGGAGCCATGAACGC 1069
Query 1108 TAGAGCATGGGCCTCTAAGTCTTTGGCCACTGTCTCAATTGGGGATTCAAGCTCATCAAA 1167
||||| |||||||| |||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1070 CAGAGCTTGGGCCTCCAAGTCTTTGGCCACCGTCTCAATCGGGGATTCAAGCTCATCAAA 1129
Query 1168 CAGAAGAAGTTCATCTTCTCAGTGACTTCATAA-TTCTATAATTTTAGCAAATATGGTCA 1226
|||||||||||||||||||||||||||||| || ||||||||||| || | |
Sbjct 1130 CAGAAGAAGTTCATCTTCTCAGTGACTTCA-AACTTCTATAATTT---CA-----G--C- 1177
Query 1227 CAGCTAAAATGTGTTTGGCTGTATCATGTTTCTGTTACAGCTTTTCAGGTTAAAGTTTTA 1286
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1178 ----TAAAATGTTTTTGGCTGTATCATCCATCTGTTACAGCTTTTCAGGTTAAAGTTTTA 1233
Query 1287 CCCTTTGTCCTGTATAATCAGCAGTGTTCCTCTAGACCAACAACTTTGGAGAGGGCTTAA 1346
|| ||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1234 CCTTTT-TCCTGTATAATCAGCAGT-T-CCTCTAGACCAACAACTTTGGAGAGGGCTTAA 1290
Query 1347 TTCATAGCTGAACATTTTGTAGTAGAAGTGTATATGTCATCAGATGGCAAAATTATAAAA 1406
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1291 TTCATAGCTGAACATTTTGTAGTAGAAGTGTATATGTCATCAGATGGCCAAATTATAAAA 1350
Query 1407 GTCAAATTCATAtttttttGTCAATATTATATCAGAATTGGTC 1449
||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 1351 GTCAA-TTCATATTTTTTTGTCAATATTGTATCAGAATTGGTC 1392
Score = 327 bits (177), Expect = 1e-88
Identities = 258/295 (87%), Gaps = 13/295 (4%)
Strand=Plus/Plus
Query 12 ACCCAGTACCCAGCAGCAACCACAACC-TCTTCTTCTTCTTCAATATCTCCCTCAAATAA 70
|||||||||| |||||||||||||||| ||||| || |||||||||||||||||||| |
Sbjct 1 ACCCAGTACCAAGCAGCAACCACAACCGCCTTCTCCTCCTTCAATATCTCCCTCAAATCA 60
Query 71 CAGATTCCATTACCGCTGCATAAATATCTCTTCAGTAAAGAAACATCATTGATTCAATTC 130
|| | ||||||| ||||||| ||| |||||| || | || |||| ||||||||||||||
Sbjct 61 CAAAATCCATTAACGCTGCACAAAAATCTCTCCA-TTAA-AAACGCCATTGATTCAATTC 118
Query 131 CCAGAAACATCAACCTCTCACCTGTTTCCAATTTGTCGGCAACAACAA--CA--A--ATT 184
|||||||||||||||||||||||||||| ||||||||||||||||||| | | |||
Sbjct 119 CCAGAAACATCAACCTCTCACCTGTTTCTAATTTGTCGGCAACAACAAATCTGCAGCATT 178
Query 185 TCTATTCTGGGTTCTGTGAATTTCGTAGGgagagaaatagagatagagagagagagagCT 244
|||||||||||||||||||||||||| |||| ||| | ||||| |||||||| ||||||
Sbjct 179 TCTATTCTGGGTTCTGTGAATTTCGTGGGGACAGAGAGAGAGA--GAGAGAGATAGAGCT 236
Query 245 TCTGGGTATTTTTTAATGGAGAAGGAG-ATCTTGTTGTTGCTATTGGTCATCATG 298
||||||||| ||||||||||||| || ||||||||||||||||||||||| |||
Sbjct 237 TCTGGGTATCGTTTAATGGAGAAG-AGGATCTTGTTGTTGCTATTGGTCATGATG 290
> Ahg942571 jgi|Araly1|942571|scaffold_603115.1
Length=939
Score = 411 bits (222), Expect = 1e-113
Identities = 607/783 (78%), Gaps = 65/783 (8%)
Strand=Plus/Plus
Query 439 TGTCACCGAGGGTGATGAGC-GTTGGTTGCAAATAGCATT-GGATATGATTCATAAGAAC 496
|||||||||||| ||||| | | ||||| ||||| || || ||||||||| ||||||||
Sbjct 186 TGTCACCGAGGGAGATGATCAG-TGGTTACAAATGGC-TTCTGATATGATTGATAAGAAC 243
Query 497 AAGTGTGATTATGTGGCTTTGCTTTTCTATGCATCATGGTGTCCATTCTCAAGGTCATTT 556
|||||||| ||||||||||| || |||||||||||||||||||| ||||| || | | ||
Sbjct 244 AAGTGTGACTATGTGGCTTTACTCTTCTATGCATCATGGTGTCCTTTCTCCAGATTACTT 303
Query 557 AGACCGAG-TTTCGATGTTATCTC-TTCTCTCTATTCCTCCATTCCTCATTTTGCCATTA 614
||||| || ||| ||| |||| || || | | ||||| || ||||||| ||||| |||
Sbjct 304 AGACCAAGCTTT-GATCTTATGTCTTTGT-TATATTCATCGGTTCCTCACTTTGCAATTG 361
Query 615 AGGAATCATCCA-TT-AAGCCTAGCACCCTT-TCCAAGTATGGAGTTCATGGGTTTCCCA 671
||||||||| || || ||| |||| | |||| |||||||||||||||||||||||||| |
Sbjct 362 AGGAATCAT-CAGTTAAAG-CTAGTA-CCTTGTCCAAGTATGGAGTTCATGGGTTTCCTA 418
Query 672 CTCTCTTACTTTTGAATTCGACAATGCGG-GCACG-ATACCGAGGAACCCGAA-TGCTTG 728
|| || | ||| ||||||| |||||| || | | | ||||| ||| || ||| | || |
Sbjct 419 CTATCATCCTTATGAATTCAACAATG-GGCGTA-GTTTACCGGGGATCCAGAACT-CTAG 475
Query 729 ATTCTCTTGTTGCTTTCTACAGTGATGTTACCGGCATTGAGACA-TTGGATAAAACTTCT 787
||||||||||||| ||||||||||||||||| || ||||| | | ||||| ||||||
Sbjct 476 ATTCTCTTGTTGCCTTCTACAGTGATGTTACTGGAATTGA-AAAGCTGGATGAAACTTGG 534
Query 788 CTCGAG-AG-A-AGCGTATCAGTTCCTCATCTCGGTAACGAAAACAACACAG-AGCCAGA 843
| ||| || | || || | ||||| |||| | | | | |||| | |||||||
Sbjct 535 GTTGAGAAGAACAG-GT-T-AGTTCATCAT-T---T--C-----C-ACAC-GAAGCCAGA 578
Query 844 AAACTGTCCATTCACGTGGG---CAAGATCGCCTGAGAATATGCTTCGACAAGAGACCTA 900
|| || || ||| | |||| ||||||| || |||||| ||||||| |||||||| ||
Sbjct 579 GAATTGCCCCTTCCCATGGGCAACAAGATCACCGGAGAATCTGCTTCGCCAAGAGACTTA 638
Query 901 TCTAG-CTCTTGCCATTGTATTCGTCCTGTTGAGATTGCTTCACTTGATATATCCTACAC 959
|| | ||||||||| || |||||| ||||||||||||| || ||||| | || |||
Sbjct 639 CCT-GACTCTTGCCACGGTTTTCGTCTTGTTGAGATTGCTACAGTTGATTTCCCCCACAA 697
Query 960 TCGTCGTGTTTA-TGAAGTTCACTTGGAGACGGATTGCTCAGAACATGAGA-CTAGAAAG 1017
| || ||| ||| ||| | ||||||| ||||| ||||||| ||||||||| | | ||
Sbjct 698 TGGTTGTG-TTAGCGAAATCCACTTGGGGACGGGTTGCTCATAACATGAGACCGGGGAA- 755
Query 1018 CCTGCTAGAACATACCGTCGGGTTTCTAAGCCGAGCTGTACAATTATGCATGCATAGAAG 1077
||| || || |||||| | || | | | | | | ||| | | ||||| | ||
Sbjct 756 CCTTCTGGAGCATACC--C---TTGCCATG--TA--TCT-CAAAGAACCTTGCAT-G-AG 803
Query 1078 AAGCAATCTGCAGGGAGGGGCTATGAACGCTAGAGCATGGGCCTCTAAGTCTTTGGCCAC 1137
|||||| |||| | ||| || ||||| |||||||||||||| || ||||||||||||||
Sbjct 804 TAGCAATTTGCAAGAAGGAGCCATGAATGCTAGAGCATGGGCTTCCAAGTCTTTGGCCAC 863
Query 1138 TGTCTCAATTGGGGATTCAAGCTCATCAAACAGAAGAAGTT-CATCTTCTCAGTGACTTC 1196
||||||||||||||| ||||||||||||| |||||| ||| || |||| |||||||||
Sbjct 864 TGTCTCAATTGGGGAATCAAGCTCATCAAGCAGAAGT-GTTTCAGCTTCACAGTGACTTT 922
Query 1197 ATA 1199
|||
Sbjct 923 ATA 925
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54469050350
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5