BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G34790.1
Length=1112
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473652 jgi|Araly1|473652|fgenesh2_kg.1__3606__AT1G34790.1 1618 0.0
Ahg318837 jgi|Araly1|318837|fgenesh1_pm.C_scaffold_3001853 180 2e-44
> Ahg473652 jgi|Araly1|473652|fgenesh2_kg.1__3606__AT1G34790.1
Length=1059
Score = 1618 bits (876), Expect = 0.0
Identities = 1005/1067 (94%), Gaps = 9/1067 (1%)
Strand=Plus/Plus
Query 17 TTTCATCTCTCTCCAACAACTATTCACCACATTCAATGGAGTCACCACCACTATACGAGA 76
||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 1 TTTCATCACTCTCCAACCACTATTCACCACATTCAATGGAGT---CACCACTATACGAGA 57
Query 77 TATCCTCAAGCTCTTCTTCTGAAAAACCTAGACACCATTTCCAATCCCTTGATCTCTTCC 136
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 58 TATCCTCAAGCTCTTCTTCTGAAAAACCTAGAAACCATTTCCAATCCCTTGATCTCTTCC 117
Query 137 CTAACCTCAACCAAAACTCTTGTATCAACAATACCCTAATTGAGCCTTTACCGCTTATTG 196
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 118 CTAACCTCAACCAAAACTCTTGTAACAACAATAACCTAATTGAGCCTTTACCGCTTATTG 177
Query 197 ATCGCATAAACTTGAACTCAAACCTAGACCTAAACCCTAATCCCTTGTATGCggaagaag 256
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 178 ATCGGATAAACTTGAACTCAAACCTAGACCTAAACCCTAAGCCCTTGTATGCGGAAGAAG 237
Query 257 gagagcaagaggaggaagaagaagaagaagaagaCCGTGAAGTGGACGTGGACTTACACA 316
||||||||||||||||||||||||||| || ||| |||||||||||||| |||||||||
Sbjct 238 GAGAGCAAGAGGAGGAAGAAGAAGAAG-AG--GACGGTGAAGTGGACGTGAACTTACACA 294
Query 317 TCGGCCTTCCTGGTTTTGGTAAACCAAGCAATGATGCTAAACAGCTGAAGAAGAGAAATG 376
||||||||||||||||||||||| || || ||| ||||||| |||||||||||| |||||
Sbjct 295 TCGGCCTTCCTGGTTTTGGTAAATCAGGCGATGGTGCTAAAGAGCTGAAGAAGAAAAATG 354
Query 377 GGAAGGAGATCGCCACATATGACGCCGGAAAAGGCATCGAGAATGAACTTTCCGGAAAGG 436
|||||||||||||||||||||| |||||||||| ||| ||||||||| ||||||| ||||
Sbjct 355 GGAAGGAGATCGCCACATATGATGCCGGAAAAGACATTGAGAATGAAGTTTCCGGCAAGG 414
Query 437 CATACTGGATCCCGGCGCCGGAGCAAATTCTCATAGGGTTCACTCATTTTTCTTGCCATG 496
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 415 CATACTGGATCCCGGCGCCGGAGCAAATTCTCATAGGCTTCACTCATTTTTCTTGCCATG 474
Query 497 TATGCTTCAAGACATTCAATCGCTACAACAATCTTCAGATGCACATGTGGGGACATGGTT 556
| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 475 TGTGCTTCAAGACATTCAATCGTTACAATAATCTTCAGATGCACATGTGGGGACATGGTT 534
Query 557 CACAATACAGGAAAGGACCGGAGTCACTGAAAGGCACACAGCCACGAGCCATGTTAGGGA 616
|||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 535 CACAATACAGAAAAGGACCAGAGTCACTGAAAGGCACGCAGCCACGAGCCATGTTAGGGA 594
Query 617 TCCCTTGTTACTGCTGCGTTGAAGGGTGCAGGAACCACATTGACCATCCTCGTTCCAAGC 676
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 595 TCCCTTGTTACTGCTGCGTCGAAGGGTGTAGGAACCACATTGACCATCCTCGTTCCAAGC 654
Query 677 CACTGAAAGACTTTAGGACGCTCCAAACGCACTACAAACGCAAACACGGACACAAACCCT 736
|||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 655 CACTCAAAGACTTTAGAACGCTCCAAACGCACTACAAACGCAAACACGGCCACAAACCCT 714
Query 737 TCTCGTGTCGCCTTTGCGGTAAGCTTTTGGCTGTCAAGGGCGATTGGCGAACACATGAGA 796
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 TCTCGTGTCGCATTTGCGGTAAGCTTTTGGCTGTCAAGGGCGATTGGCGAACACATGAGA 774
Query 797 AGAATTGTGGAAAACGTTGGGTTTGCGTTTGCGGTTCTGATTTTAAACACAAACGTTCTC 856
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 775 AGAACTGTGGGAAACGTTGGGTTTGCGTTTGCGGTTCTGATTTTAAACACAAACGTTCCC 834
Query 857 TTAAGGACCATGTTAAGGCGTTTGGGTCTGGTCATGGGCCTTATCCAACTGGTTTGTTTG 916
|||||||||||||||| || |||||| ||||||||||||||||||| |||||||||||||
Sbjct 835 TTAAGGACCATGTTAAAGCTTTTGGGCCTGGTCATGGGCCTTATCCGACTGGTTTGTTTG 894
Query 917 AAGAGCAGGCTTCTAATTCATCTGTCTCCGAGACTTTGtttttttAAATTTGGGCATCTT 976
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 895 AAGAGCAGGCTTCTAATTCATCTGTCTCCGAGACTTTGTTCTTTTAAATTTGGGCATCTT 954
Query 977 TTTC-TTTCGCTTATGAAATATCTATTTACTTTAGAAAAATAATAATGTGGTATCTAATT 1035
||| ||| ||||||| | || |||||||||||||| ||||||| ||||||| ||||||
Sbjct 955 TTTTATTT-GCTTATGGACCATTTATTTACTTTAGAATAATAATA-TGTGGTACCTAATT 1012
Query 1036 GTTCCAAATTAGGAACACGAAGTGTACCATTATATTTTTCATCACTA 1082
||| | ||||||||| ||||||||||||||||||| ||||||| |||
Sbjct 1013 GTTTCGAATTAGGAATACGAAGTGTACCATTATATGTTTCATCTCTA 1059
> Ahg318837 jgi|Araly1|318837|fgenesh1_pm.C_scaffold_3001853
Length=1062
Score = 180 bits (97), Expect = 2e-44
Identities = 333/444 (75%), Gaps = 28/444 (6%)
Strand=Plus/Plus
Query 463 ATTCTCATAGGGTTC-ACTCATTTTTCTTG-CCATGTATGCTTCAAGACATTCAATC-GC 519
||||| || |||| | || || || ||||| || | ||||||||||||| ||||| | |
Sbjct 568 ATTCTGAT-GGGTCCTACACAGTTCTCTTGTCC-TCTATGCTTCAAGACCTTCAA-CAGA 624
Query 520 TACAACAATCTTCAGATGCACATGTGGGGACATGGTTCACAATACAGGAAAGGACCGGAG 579
||||| ||| | || |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 625 TACAATAATATGCAAATGCACATGTGGGGACATGGTTCACAATACAGAAAAGGACCGGAG 684
Query 580 TCACTGAA-AGGCACACAGCCA-CGAGCCATGTT-AGGGATCCCTTGTTACTGCTGCGTT 636
|| || || ||| ||||| ||| || || ||| | | | | ||||| |||||||| |
Sbjct 685 TCGCT-AAGAGGGACACAACCAACG-GCGATGCTGAAGC-TGCCTTGCTACTGCTGTGCA 741
Query 637 GAAGGG-TGCAGGAACCACATTGACCATCCTCGTTCCAAG-CCACTGAAAGACTTTAGGA 694
||| |||| |||| |||| ||||| || | | ||| || || || ||||| | |
Sbjct 742 CC-GGGCTGCAAGAACAACATAGACCACCCGAGGGC-AAGGCCGCTCAAGGACTTCCGTA 799
Query 695 CGCTCCAAACGCACTACAAACGCAAACACGGACACAAACCCTTCT-CGTGTCGCCTTTGC 753
|||| || || || ||||| || || ||||| | |||||| | | ||||| ||
Sbjct 800 CGCTTCAGACACATTACAAGCGGAAGCACGGTGTGAGACCCTT-TGCTTGTCGTAGGTGT 858
Query 754 GGTAAG-CTTTTGGCTGTCAAGGGCGATTGGCGAACACATGAGAAGAATTGTGGAAAACG 812
|| ||| |||||| | ||||| || |||||| | || || |||||||| ||||| || |
Sbjct 859 GGGAAGGCTTTTG-CGGTCAAAGGAGATTGGAGGACCCACGAGAAGAACTGTGGGAAGC- 916
Query 813 T-TGGGT-TTGCGTT-TGCGGTTCTGATTTTAAACACAA-ACGTTCTCTTAAGGACCATG 868
| ||| | |||| | || || || ||||| || ||||| | || | ||||||||||| |
Sbjct 917 TATGG-TATTGC-TCATGTGGGTCGGATTTCAAGCACAAGAGGT-CACTTAAGGACCACG 973
Query 869 TTAAGGCGTTTGGGTCTGGTCATG 892
| ||||| |||||| ||||||||
Sbjct 974 TCAAGGCCTTTGGGAATGGTCATG 997
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41439610779
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5