BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G34825.1
Length=484
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921168 jgi|Araly1|921168|scaffold_102449.1 364 2e-100
> Ahg921168 jgi|Araly1|921168|scaffold_102449.1
Length=315
Score = 364 bits (197), Expect = 2e-100
Identities = 278/316 (88%), Gaps = 9/316 (3%)
Strand=Plus/Plus
Query 78 TACTTAAAAACGATACGTTATGGGGATTCAAACATGCAGTGTTTTAATAATCGTAGCTAT 137
|||||||||||| |||||||||| || |||||||||||||||||| | || ||||||||
Sbjct 3 TACTTAAAAACG-TACGTTATGGCGACTCAAACATGCAGTGTTTTCTTGATGGTAGCTAT 61
Query 138 ATTGACGATGATGTTTTCAGCACACATTGCTCAATCAAACAGTATA-ACAATGTGTGTGA 196
||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||
Sbjct 62 ATTGACGATGATGTTTTCAGCACACATTGCTCACTCAAACAGTATAGA-AATGTGTGTGA 120
Query 197 AACATTGTGCACAAAACGAGTGCTTGAAAGCGGCGAAAAAACCTACTCCTGAAATTTGTG 256
||||||| ||||| ||| |||||||||||||||||||||| |||||||||| ||||||||
Sbjct 121 AACATTGCGCACAGAACCAGTGCTTGAAAGCGGCGAAAAACCCTACTCCTGCAATTTGTG 180
Query 257 ATGAAGCTTGCAAGAAAATCTGCAACAATCAATTATTCGGTGATGAAAAGTGGT-TTGTT 315
|||||||||||||||||||||||||||||||| ||||||||| |||||| | | |||||
Sbjct 181 ATGAAGCTTGCAAGAAAATCTGCAACAATCAACTATTCGGTGGTGAAAAATT-TATTGTT 239
Query 316 CCTGCTCCAAAGGGAAGCTCCCGAATCTGTAGATGGGCGCCTAAGTATTGCCA---A-TT 371
||| || |||||||||||| | ||||||||||| |||| |||||||| | | ||
Sbjct 240 CCTCCTGTTAAGGGAAGCTCCAGGTTCTGTAGATGGATGCCTCAGTATTGCTAGCTAGTT 299
Query 372 CTGAATTATGAAAACT 387
| |||||| |||||||
Sbjct 300 CCGAATTACGAAAACT 315
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17551570940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5