BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G35160.2
Length=1402
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922661 jgi|Araly1|922661|scaffold_103942.1 1291 0.0
Ahg942561 jgi|Araly1|942561|scaffold_603105.1 874 0.0
Ahg476998 jgi|Araly1|476998|fgenesh2_kg.2__2128__AT1G78300.1 604 4e-172
Ahg952013 jgi|Araly1|952013|scaffold_2900002.1 337 2e-91
Ahg949114 jgi|Araly1|949114|scaffold_801001.1 326 4e-88
> Ahg922661 jgi|Araly1|922661|scaffold_103942.1
Length=845
Score = 1291 bits (699), Expect = 0.0
Identities = 737/756 (97%), Gaps = 0/756 (0%)
Strand=Plus/Plus
Query 118 TCCATCCATCACCGATCTCTAATGGCGGCACCACCAGCATCATCCTCGGCGAGGGAAGAG 177
||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCCTTCAATCTCCGATCTCTAATGGCGGCACCACCAGCATCATCCTCGGCGAGGGAAGAG 60
Query 178 TTCGTGTACCTCGCAAAGCTCGCAGAGCAAGCGGAACGTTACGAAGAAATGGTTGAATTC 237
||||| ||||||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 61 TTCGTTTACCTCGCAAAACTCGCTGAACAAGCGGAACGTTACGAAGAAATGGTTGAATTC 120
Query 238 ATGGAAAAAGTCGCTGAAGCCGTTGACAAAGACGAACTCACCGTCGAAGAACGTAATCTC 297
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 ATGGAAAAAGTCGCTGAAGCCGTCGACAAAGACGAACTCACCGTCGAAGAACGTAATCTC 180
Query 298 CTCTCCGTCGCTTACAAAAACGTAATCGGCGCTCGTCGTGCTTCCTGGAGAATCATCTCT 357
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 CTCTCCGTCGCTTACAAAAACGTCATCGGCGCTCGTCGTGCTTCCTGGAGAATCATCTCT 240
Query 358 TCCATTGAACAAAAAGAAGAGAGTCGTGGTAACGATGACCATGTGACCACGATCCGTGAT 417
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 241 TCCATTGAACAAAAGGAAGAGAGTCGTGGTAACGATGACCATGTAACCACGATCCGTGAT 300
Query 418 TACAGAAGCAAGATCGAATCTGAGTTATCGAAAATCTGTGACGGTATTCTTAAGCTTCTT 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TACAGAAGCAAGATCGAATCTGAGTTATCGAAAATCTGTGACGGTATTCTTAAGCTTCTT 360
Query 478 GATACTAGACTTGTTCCTGCTTCTGCTAATGGAGATTCTAAGGTTTTTTACCTTAAGATG 537
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 361 GATACTAGACTTGTTCCAGCTTCTGCTAATGGAGATTCGAAGGTTTTTTACCTTAAGATG 420
Query 538 AAGGGAGATTATCATAGGTATTTGGCTGAGTTTAAGACTGGTCAAGAGAGGAAAGATGCT 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAGGGAGATTATCATAGGTATTTGGCTGAGTTTAAGACTGGTCAAGAGAGGAAAGATGCT 480
Query 598 GCTGAACATACTCTCACCGCTTACAAAGCTGCTCAGGATATTGCTAATGCTGAATTGGCT 657
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 481 GCTGAACATACTCTCACCGCTTACAAAGCCGCTCAGGATATTGCTAATTCTGAATTGGCT 540
Query 658 CCAACGCATCCGATTCGTCTTGGTTTGGCTTTGAATTTCTCTGTGTTTTACTATGAGATT 717
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 541 CCAACGCATCCGATTCGTCTTGGTTTGGCTTTGAACTTCTCTGTGTTTTACTATGAGATT 600
Query 718 CTTAATTCTCCAGATCGTGCTTGTAATCTCGCTAAGCAGGCGTTTGATGAAGCCATTGCT 777
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CTTAATTCTCCTGACCGTGCTTGTAATCTCGCTAAGCAGGCGTTTGATGAAGCCATTGCT 660
Query 778 GAGTTAGATACTCTTGGAGAGGAGTCATACAAGGATAGTACCTTGATCATGCAGCTTCTT 837
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GAGTTGGATACTCTTGGAGAGGAGTCATACAAGGATAGTACCTTGATCATGCAGCTTCTT 720
Query 838 CGTGACAATCTTACTCTCTGGACTTCTGACATGCAG 873
||||||||||||||||||||||||||||||||||||
Sbjct 721 CGTGACAATCTTACTCTCTGGACTTCTGACATGCAG 756
Score = 159 bits (86), Expect = 4e-38
Identities = 90/92 (98%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 955 CAGGACGAAAGTCCGGAGGAGATTAAAGAAGCAGCAGCACCAAAGCCTGCTGAAGAACAG 1014
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 754 CAGGACGAAAGTCCGGAGGAGATCAAAGAAGCAGCAGCACCAAAGCCTGCTGAAGAACAG 813
Query 1015 AAGGAGATCTAAGTTTGTGGTTTCTTTTTTCA 1046
||||||| ||||||||||||||||||||||||
Sbjct 814 AAGGAGACCTAAGTTTGTGGTTTCTTTTTTCA 845
> Ahg942561 jgi|Araly1|942561|scaffold_603105.1
Length=848
Score = 874 bits (473), Expect = 0.0
Identities = 655/742 (88%), Gaps = 15/742 (2%)
Strand=Plus/Plus
Query 138 AATGGCGGCACCACCAGCATCATCCTCGGCGAGGGAAGAGTTCGTGTACCTCGC-AAAGC 196
|||||| | | |||||| | ||||||| || || ||||| ||||| ||| | || ||| |
Sbjct 27 AATGGC-G-A-CACCAGGAGCATCCTCAGCAAGAGAAGAATTCGTATACATGGCGAAA-C 82
Query 197 TCGCAGAGCAAGCGGAACGTTACGAAGAAATGGTTGAATTCATGGAAAAAGTCGCTGAAG 256
|||| || ||||| || |||||||||||||||||||||||||||||||||||||| |||
Sbjct 83 TCGCTGAACAAGCAGAGCGTTACGAAGAAATGGTTGAATTCATGGAAAAAGTCGCAAAAG 142
Query 257 CCGTTGACAAAGACGAACTCACCGTCGAAGAACGTAATCTCCTCTCCGTCGCTTACAAAA 316
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 143 CTGTTGACAAAGACGAACTCACCGTCGAAGAACGTAATCTCCTCTCCGTCGCTTACAAAA 202
Query 317 ACGTAATCGGCGCTCGTCGTGCTTCCTGGAGAATCATCTCTTCCATTGAACAAAAAGAAG 376
|||| ||||| |||||||||||||| |||||||||||||| || || |||||||| ||||
Sbjct 203 ACGTCATCGGAGCTCGTCGTGCTTCATGGAGAATCATCTCATCGATCGAACAAAAGGAAG 262
Query 377 AGAGTCGTGGTAACGATGACCATGTGACCACGATCCGTGATTACAGAAGCAAGATCGAAT 436
|| |||||||||||||||||| || | ||||||||| ||||||||||| ||||||
Sbjct 263 AGTCTCGTGGTAACGATGACCACGTTTCGTTGATCCGTGACTACAGAAGCAAAATCGAAA 322
Query 437 CTGAG-TTATC-GAAAATCTGTGACGGTATTCTTAAGCTTCTTGATACTAGACTTGTTCC 494
| ||| || || || | |||||||||| || ||||||||||| ||||| | || |||||
Sbjct 323 CGGAGCTT-TCTGATA-TCTGTGACGGAATCCTTAAGCTTCTCGATACGATTCTCGTTCC 380
Query 495 TGCTTCTGCTAATGGAGATTCTAAGGTTTTTTACCTT-AAGATGAAGGGAGATTATCATA 553
||| ||||| ||||||||| ||||| |||||| || |||||||| || ||||||||||
Sbjct 381 CGCTGCTGCTTCTGGAGATTCAAAGGTGTTTTAC-TTGAAGATGAAAGGTGATTATCATA 439
Query 554 GGTATTTGGCTGAGTTTAAGA-CTGGTCAAGAGAGGAAAGATGCTGCTGAACATACTCTC 612
| || |||||||||||||| | |||||||||||||||||||||||||||||||||| |||
Sbjct 440 GATACTTGGCTGAGTTTAA-ATCTGGTCAAGAGAGGAAAGATGCTGCTGAACATACACTC 498
Query 613 ACCGCTTACAAAGCTGCTCAGGATATTGCTAA-TGCTGAATTGGCTCCAACGCATCCGAT 671
|| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 499 ACTGCTTACAAAGCTGCTCAGGATATTGCTAACT-CTGAATTGGCTCCAACGCATCCGAT 557
Query 672 TCGTCTTGGTTTGGCTTTGAATTTCTCTGTGTTTTACTATGAGATTCTTAATTCTCCAGA 731
|||||||||||| || ||||| |||||||||||||||||||||||||| |||||||| ||
Sbjct 558 TCGTCTTGGTTTAGCGTTGAACTTCTCTGTGTTTTACTATGAGATTCTCAATTCTCCTGA 617
Query 732 TCGTGCTTGTAATCTCGCTAAGCAGGCGTTTGATGAAGCCATTGCTGAGTTAGATACTCT 791
||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||
Sbjct 618 TCGTGCTTGTAATCTCGCTAAGCAGGCGTTTGATGAAGCAATTGCTGAATTGGATACTCT 677
Query 792 TGGAGAGGAGTCATACAAGGATAGTACCTTGATCATGCAGCTTCTTCGTGACAATCTTAC 851
||| || |||||||||||||| ||||| ||||| ||||||||||||||||| || || ||
Sbjct 678 TGGTGAAGAGTCATACAAGGACAGTACTTTGATTATGCAGCTTCTTCGTGATAACCTCAC 737
Query 852 TCTCTGGACTTCTGACATGCAG 873
||||||||||||||| ||||||
Sbjct 738 TCTCTGGACTTCTGATATGCAG 759
> Ahg476998 jgi|Araly1|476998|fgenesh2_kg.2__2128__AT1G78300.1
Length=1201
Score = 604 bits (327), Expect = 4e-172
Identities = 586/711 (82%), Gaps = 18/711 (3%)
Strand=Plus/Plus
Query 172 GAAGAGTTCGTGTACCTCGCAAAGCTCGCAGAGCAAGCGGA-ACGTTACGAAGAAATGGT 230
||||||||||| ||| | || |||||||| ||||||||||| | | |||||||| |||||
Sbjct 172 GAAGAGTTCGTATACATGGCTAAGCTCGCGGAGCAAGCGGAGA-GGTACGAAGAGATGGT 230
Query 231 TGAATTCATGGAAAAAGTCGCTGAAGCCGTTGACAAAGACGAACTCACCGTCGAAGAACG 290
||| || ||||| |||||| | | ||||| || || ||||||||||| ||||| ||
Sbjct 231 TGAGTTTATGGAGAAAGTCTCCGCCGCCGTCGATGGCGATGAACTCACCGTTGAAGAGCG 290
Query 291 TAATCTCCTCTCCGTCGCTTACAAAAACGTAATCGGCGCTCGTCGTGCTTCCTGGAGAAT 350
||||| ||||| ||||||||||| ||||| || || ||||| ||||| || ||| | ||
Sbjct 291 AAATCTTCTCTCTGTCGCTTACAAGAACGTGATTGGTGCTCGCCGTGCCTCGTGGCGTAT 350
Query 351 CATCTCTTCCATTGAACAAAAAGAAGAGAGTCGTGGTAACGATGACCATGTGACCACGAT 410
|| || || || || || |||||||||||||| |||||||||||||| || || |||
Sbjct 351 TATTTCATCGATCGAGCAGAAAGAAGAGAGTCGCGGTAACGATGACCACGTCACGGTGAT 410
Query 411 CCGTGATTACAGAAG-C-AAGATCGA-ATCTGAGTTATC-GAAAATCTGTGACGGTATTC 466
|||||||||||| | | |||||||| | | || | || | |||||| ||||| || |
Sbjct 411 CCGTGATTACAG--GTCTAAGATCGAGA-CGGAACTCTCTG-GAATCTGCGACGGAATCC 466
Query 467 TTAAGCTT-CTTGA-TACTAGACTTGTTCCTGCTTCTGCTAATGGAGATTCTAAGGTTTT 524
| ||| || ||||| | ||||||| | ||||| ||||| ||| ||||| ||||| ||
Sbjct 467 TCAAG-TTGCTTGACT-CTAGACTCATCCCTGCCGCTGCTTCTGGTGATTCCAAGGTCTT 524
Query 525 TTACCTTAAGATGAAGGGAGATTATCATAGGTATTTGGCTGAGTTTAAGACTGGTCAAGA 584
|||||| |||||||||||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 525 TTACCTGAAGATGAAGGGAGATTATCACAGGTACTTGGCTGAGTTCAAGACTGGTCAAGA 584
Query 585 GAGGAAAGATGCTGCTGAACATACTCTCACCGCTTACAAAGCTGCTCAGGATATTGCTAA 644
||||||||| || |||||||| |||||| ||||||||||| |||||||||||||||||||
Sbjct 585 GAGGAAAGACGCCGCTGAACACACTCTCTCCGCTTACAAATCTGCTCAGGATATTGCTAA 644
Query 645 TGCTGA-ATTGGCTCCAACGCATCCGATTCGTCTTGGT-TTGGCTTTGAATTTCTCTGTG 702
||| || || ||||| || || || || ||||||||| || || ||||| |||||||||
Sbjct 645 TGCAGAGCTT-GCTCCTACTCACCCAATCCGTCTTGGTCTT-GCATTGAACTTCTCTGTG 702
Query 703 TTTTACTATGAGATTCTTAATTCTCCAGATCGTGCTTGTAATCTCGCTAAGCAGGCGTTT 762
|| ||||| ||||| || |||||||| ||||||||||| || ||||| || ||||| |||
Sbjct 703 TTCTACTACGAGATCCTCAATTCTCCTGATCGTGCTTGCAACCTCGCCAAACAGGCCTTT 762
Query 763 GATGAAGCCATTGCTGAGTTAGATACTCTTGGAGAGGAGTCATACAAGGATAGTACCTTG 822
|||||||| ||||| ||||| || |||||||| || ||||||||||| || |||||||||
Sbjct 763 GATGAAGCGATTGCAGAGTTGGACACTCTTGGTGAAGAGTCATACAAAGACAGTACCTTG 822
Query 823 ATCATGCAGCTTCTTCGTGACAATCTTACTCTCTGGACTTCTGACATGCAG 873
||||||||||||||||||||||| || ||||||||||| || || ||||||
Sbjct 823 ATCATGCAGCTTCTTCGTGACAACCTCACTCTCTGGACATCCGATATGCAG 873
> Ahg952013 jgi|Araly1|952013|scaffold_2900002.1
Length=371
Score = 337 bits (182), Expect = 2e-91
Identities = 220/239 (92%), Gaps = 0/239 (0%)
Strand=Plus/Plus
Query 635 ATATTGCTAATGCTGAATTGGCTCCAACGCATCCGATTCGTCTTGGTTTGGCTTTGAATT 694
||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||| |
Sbjct 41 ATATTGCTAATTCTGAATTGGCTCCAACGCATCCGATTCGTCTTGGTTTAGCGTTGAACT 100
Query 695 TCTCTGTGTTTTACTATGAGATTCTTAATTCTCCAGATCGTGCTTGTAATCTCGCTAAGC 754
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 101 TCTCTGTGTTTTACTATGAGATTCTCAATTCTCCTGATCGTGCTTGTAATCTCGCTAAGC 160
Query 755 AGGCGTTTGATGAAGCCATTGCTGAGTTAGATACTCTTGGAGAGGAGTCATACAAGGATA 814
|||||||||||||||| |||||||| || ||||||||||| || |||||||||||||| |
Sbjct 161 AGGCGTTTGATGAAGCTATTGCTGAATTGGATACTCTTGGTGAAGAGTCATACAAGGACA 220
Query 815 GTACCTTGATCATGCAGCTTCTTCGTGACAATCTTACTCTCTGGACTTCTGACATGCAG 873
|||| ||||| ||||||||||||||||| || || ||||||||||| ||||| ||||||
Sbjct 221 GTACTTTGATTATGCAGCTTCTTCGTGATAACCTCACTCTCTGGACCTCTGATATGCAG 279
> Ahg949114 jgi|Araly1|949114|scaffold_801001.1
Length=516
Score = 326 bits (176), Expect = 4e-88
Identities = 218/239 (91%), Gaps = 0/239 (0%)
Strand=Plus/Plus
Query 635 ATATTGCTAATGCTGAATTGGCTCCAACGCATCCGATTCGTCTTGGTTTGGCTTTGAATT 694
||||||||||| ||||||||||||||| ||||||||||||||||||||| || ||||| |
Sbjct 185 ATATTGCTAATTCTGAATTGGCTCCAAAGCATCCGATTCGTCTTGGTTTAGCGTTGAACT 244
Query 695 TCTCTGTGTTTTACTATGAGATTCTTAATTCTCCAGATCGTGCTTGTAATCTCGCTAAGC 754
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 245 TCTCTGTGTTTTACTATGAGATTCTCAATTCTCCTGATCGTGCTTGTAATCTCGCTAAGC 304
Query 755 AGGCGTTTGATGAAGCCATTGCTGAGTTAGATACTCTTGGAGAGGAGTCATACAAGGATA 814
|||||||||||||||| |||||||| || ||||||||||| || |||||||||||||| |
Sbjct 305 AGGCGTTTGATGAAGCTATTGCTGAATTGGATACTCTTGGTGAAGAGTCATACAAGGACA 364
Query 815 GTACCTTGATCATGCAGCTTCTTCGTGACAATCTTACTCTCTGGACTTCTGACATGCAG 873
|||| ||||| ||||||||||||||||| || || ||||||||||| |||| ||||||
Sbjct 365 GTACTTTGATTATGCAGCTTCTTCGTGATAACCTCACTCTCTGGACCGCTGATATGCAG 423
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52412177120
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5