BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G35180.1 Length=894 Score E Sequences producing significant alignments: (Bits) Value Ahg473659 jgi|Araly1|473659|fgenesh2_kg.1__3613__AT1G35180.1 1293 0.0 > Ahg473659 jgi|Araly1|473659|fgenesh2_kg.1__3613__AT1G35180.1 Length=892 Score = 1293 bits (700), Expect = 0.0 Identities = 838/901 (93%), Gaps = 23/901 (3%) Strand=Plus/Plus Query 4 AAAAAGACCTTAGATAACAAAGTTGTGTCTCTCTGAAGTCTGAACCAAAAAGATAAGACG 63 ||||| ||||||||||||||||||||| |||| ||||||||| ||||||||||| Sbjct 1 AAAAAAACCTTAGATAACAAAGTTGTG--TCTC-----TCTGAACCAGAAAGATAAGACA 53 Query 64 AAAAGGAGATCAATGGAGGAAGAATACGTAAGAGTAATAAGCATAACAACAATAGGAGTA 123 ||||||||||||||||||||||||||| |||||||||||| |||||||| || |||||| Sbjct 54 AAAAGGAGATCAATGGAGGAAGAATACATAAGAGTAATAAACATAACAATTATTGGAGTA 113 Query 124 ATCTCATGGGGTCTCATTTTCATCCTTGTAAGACGAATCTTCTCAAGCTACTCGTTCGAC 183 |||||||||||||||||||||||||| |||||||||| ||| ||| ||||||||||||| Sbjct 114 ATCTCATGGGGTCTCATTTTCATCCTCATAAGACGAATTTTCGCAAACTACTCGTTCGAC 173 Query 184 TTCAGCACCCGTATAGTCTCAACGCTTCACGCAACAATC-GCTGTCACTTTAGCAACTCT 242 |||||||| ||||||||||| |||||||||||||||| | |||||| |||||||||||| Sbjct 174 TTCAGCACTCGTATAGTCTCGACGCTTCACGCAACAA-CTGCTGTCGTTTTAGCAACTCT 232 Query 243 CTCGATTCAAGATTGGTCTTGTCCTGTTTGTCCCATTGCTTCTACATCGTCTCTCCGGCA 302 |||||||||||||||||||||||||||||||||||||||||| || || ||||||||||| Sbjct 233 CTCGATTCAAGATTGGTCTTGTCCTGTTTGTCCCATTGCTTCAACGTCATCTCTCCGGCA 292 Query 303 GATGGAAACGTTGGCGTTTTCATTGTCGTACATGATCTACGATCTCATTTGTAGCCACTT 362 ||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| Sbjct 293 GATGGAAACGTTGGCGTTTTCATTGTCATACATGATCTATGATCTCATATGTAGCCACTT 352 Query 363 TGATCAAGTCCTTAGCATTGATAATGCGGTTCATCATTCTGTTTGCATTCTTGGTTTTGT 422 |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 353 TGATCAAGTCATTAGCATTGATAATGCTGTTCATCATTCTGTTTGCATTCTTGGTTTTGT 412 Query 423 AGCTGGACTTTTCTACCAAAAGTGTGGATCCGAGATGGTGGCAGCACTTTGGATAACAGA 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 413 AGCTGGACTTTTCTACCAAAAGTGTGGATCCGAGATGGTGGCAGCACTTTGGATAACAGA 472 Query 483 GATCTCAAGTCCGTTTCTTCACCTCAGGGAGATTCTTAAAGAGATTGGTTATAGAGACAC 542 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 473 GATCTCGAGTCCGTTTCTTCACCTCAGGGAGATTCTTAAAGAGATTGGTTATAGAGACAC 532 Query 543 CGACCTAAATCTTGCAGCCGATGTGTGTTTTGCAACAATTTTCTCGTTGGCCAGAATGGT 602 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 533 CGACCTAAATCTTGCAGCCGATGTGTGTTTTGCAACAATTTTCTCGTTGGCCAGAATGGT 592 Query 603 GGGTGGACCTTACCTAGTTTACGTAACAATATCAGCCGATAATCCCATTCTCATCAAGGC 662 |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 593 GGGTGGACCTTACCTAGTTTACGTAACAATATCAGCTGATAATCCCATCCTCATCAAGGC 652 Query 663 AATGGCGTTGGGGTTACAACTTGTGAGCGCATTCTGGTTCTATAAAATCCTCAAAATGAT 722 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 653 AATGGCGTTGGGATTACAACTTGTGAGCGCATTCTGGTTCTATAAAATCCTCAAAATGAT 712 Query 723 GAGATACAAATTTATCAAAAGATCAATGTCCAACAAAAAATCGGCTTAGTTGAAATTCCA 782 |||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||| Sbjct 713 GAGATACAAATTTATCAAAAGATCAATGTCCAACCAAAAATCTACTTAGTTAAAATTCCA 772 Query 783 AAAACTCTATCATGTA-AC-ATTTGACTCAT---C-----C--TTTT-CTATATGTAAGT 829 || | |||||||| || | ||||||||||| | | |||| |||||||||| | Sbjct 773 AATATTCTATCATATATATTATTTGACTCATATGCTTTTTCAGTTTTTCTATATGTAAAT 832 Query 830 TAAATGTGAGGAATCCAAAGAAACTGACTTATACTAATAAATAAAAGATATGAAAATCCA 889 ||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||| Sbjct 833 TAAATGTGAGGAATCCAAAGAAA-TGACTTAAACTTATAAATAAAAGATATGAAAATCCA 891 Query 890 T 890 | Sbjct 892 T 892 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33128814873 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5