BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G35180.1
Length=894
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473659 jgi|Araly1|473659|fgenesh2_kg.1__3613__AT1G35180.1 1293 0.0
> Ahg473659 jgi|Araly1|473659|fgenesh2_kg.1__3613__AT1G35180.1
Length=892
Score = 1293 bits (700), Expect = 0.0
Identities = 838/901 (93%), Gaps = 23/901 (3%)
Strand=Plus/Plus
Query 4 AAAAAGACCTTAGATAACAAAGTTGTGTCTCTCTGAAGTCTGAACCAAAAAGATAAGACG 63
||||| ||||||||||||||||||||| |||| ||||||||| |||||||||||
Sbjct 1 AAAAAAACCTTAGATAACAAAGTTGTG--TCTC-----TCTGAACCAGAAAGATAAGACA 53
Query 64 AAAAGGAGATCAATGGAGGAAGAATACGTAAGAGTAATAAGCATAACAACAATAGGAGTA 123
||||||||||||||||||||||||||| |||||||||||| |||||||| || ||||||
Sbjct 54 AAAAGGAGATCAATGGAGGAAGAATACATAAGAGTAATAAACATAACAATTATTGGAGTA 113
Query 124 ATCTCATGGGGTCTCATTTTCATCCTTGTAAGACGAATCTTCTCAAGCTACTCGTTCGAC 183
|||||||||||||||||||||||||| |||||||||| ||| ||| |||||||||||||
Sbjct 114 ATCTCATGGGGTCTCATTTTCATCCTCATAAGACGAATTTTCGCAAACTACTCGTTCGAC 173
Query 184 TTCAGCACCCGTATAGTCTCAACGCTTCACGCAACAATC-GCTGTCACTTTAGCAACTCT 242
|||||||| ||||||||||| |||||||||||||||| | |||||| ||||||||||||
Sbjct 174 TTCAGCACTCGTATAGTCTCGACGCTTCACGCAACAA-CTGCTGTCGTTTTAGCAACTCT 232
Query 243 CTCGATTCAAGATTGGTCTTGTCCTGTTTGTCCCATTGCTTCTACATCGTCTCTCCGGCA 302
|||||||||||||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct 233 CTCGATTCAAGATTGGTCTTGTCCTGTTTGTCCCATTGCTTCAACGTCATCTCTCCGGCA 292
Query 303 GATGGAAACGTTGGCGTTTTCATTGTCGTACATGATCTACGATCTCATTTGTAGCCACTT 362
||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct 293 GATGGAAACGTTGGCGTTTTCATTGTCATACATGATCTATGATCTCATATGTAGCCACTT 352
Query 363 TGATCAAGTCCTTAGCATTGATAATGCGGTTCATCATTCTGTTTGCATTCTTGGTTTTGT 422
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 353 TGATCAAGTCATTAGCATTGATAATGCTGTTCATCATTCTGTTTGCATTCTTGGTTTTGT 412
Query 423 AGCTGGACTTTTCTACCAAAAGTGTGGATCCGAGATGGTGGCAGCACTTTGGATAACAGA 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 AGCTGGACTTTTCTACCAAAAGTGTGGATCCGAGATGGTGGCAGCACTTTGGATAACAGA 472
Query 483 GATCTCAAGTCCGTTTCTTCACCTCAGGGAGATTCTTAAAGAGATTGGTTATAGAGACAC 542
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 GATCTCGAGTCCGTTTCTTCACCTCAGGGAGATTCTTAAAGAGATTGGTTATAGAGACAC 532
Query 543 CGACCTAAATCTTGCAGCCGATGTGTGTTTTGCAACAATTTTCTCGTTGGCCAGAATGGT 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 CGACCTAAATCTTGCAGCCGATGTGTGTTTTGCAACAATTTTCTCGTTGGCCAGAATGGT 592
Query 603 GGGTGGACCTTACCTAGTTTACGTAACAATATCAGCCGATAATCCCATTCTCATCAAGGC 662
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 593 GGGTGGACCTTACCTAGTTTACGTAACAATATCAGCTGATAATCCCATCCTCATCAAGGC 652
Query 663 AATGGCGTTGGGGTTACAACTTGTGAGCGCATTCTGGTTCTATAAAATCCTCAAAATGAT 722
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 AATGGCGTTGGGATTACAACTTGTGAGCGCATTCTGGTTCTATAAAATCCTCAAAATGAT 712
Query 723 GAGATACAAATTTATCAAAAGATCAATGTCCAACAAAAAATCGGCTTAGTTGAAATTCCA 782
|||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||
Sbjct 713 GAGATACAAATTTATCAAAAGATCAATGTCCAACCAAAAATCTACTTAGTTAAAATTCCA 772
Query 783 AAAACTCTATCATGTA-AC-ATTTGACTCAT---C-----C--TTTT-CTATATGTAAGT 829
|| | |||||||| || | ||||||||||| | | |||| |||||||||| |
Sbjct 773 AATATTCTATCATATATATTATTTGACTCATATGCTTTTTCAGTTTTTCTATATGTAAAT 832
Query 830 TAAATGTGAGGAATCCAAAGAAACTGACTTATACTAATAAATAAAAGATATGAAAATCCA 889
||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||
Sbjct 833 TAAATGTGAGGAATCCAAAGAAA-TGACTTAAACTTATAAATAAAAGATATGAAAATCCA 891
Query 890 T 890
|
Sbjct 892 T 892
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33128814873
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5