BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G35183.1

Length=153
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg922663 jgi|Araly1|922663|scaffold_103944.1                        113    3e-25


> Ahg922663 jgi|Araly1|922663|scaffold_103944.1
Length=419

 Score =  113 bits (61),  Expect = 3e-25
 Identities = 104/123 (85%), Gaps = 10/123 (8%)
 Strand=Plus/Plus

Query  2    TGGAAAGTAACAACTTCA-TT-CGTGAAC-ATGACGTTGAGGACACAG-GATCATATC-A  56
            ||||||| |||||||| | || || |||| || | | |||||| || | ||||| | | |
Sbjct  238  TGGAAAGAAACAACTT-ATTTCCG-GAACGAT-ATGATGAGGAGAC-GAGATCAGAACAA  293

Query  57   GGAAGAGTCGGAGACGGAATCTGAGAGTTCTGAAGATGAGGAGACAGAATCCGATGATAT  116
            || |||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
Sbjct  294  GG-AGAGTCGGAGACGGAATCTGAGAGTTCTGACGATGAGGAGACAGAATCCGATAATTT  352

Query  117  GGA  119
            |||
Sbjct  353  GGA  355



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 4964473930


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5