BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G35210.1

Length=751
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg922666 jgi|Araly1|922666|scaffold_103947.1                        784    0.0  


> Ahg922666 jgi|Araly1|922666|scaffold_103947.1
Length=530

 Score =  784 bits (424),  Expect = 0.0
 Identities = 498/532 (94%), Gaps = 11/532 (2%)
 Strand=Plus/Plus

Query  1    ACTCAAATAGATGAAGAAATGGCGAGCTTAAGCACGAGCTTGCTCGGAATAAGACGAGGG  60
            ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct  4    ACTCAAATAGATGAAGAGATGGCGAGCTTAAGCACGAGCTTGCACGGAATAAGACGAGGG  63

Query  61   TCAAGTAACAAGAACAAGGCAGAAGATAAGACCAAAAACGCAGTGTTTTGCAAGAAGCAT  120
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  64   TCAAGTAACAAGAATAAGGCAGAAGATAAGACCAAAAACGCAGTGTTTTGCAAGAAGCAT  123

Query  121  CCAAAGCATAGACAATCACCTGGTGTTTGTTCTCTTTGTCTTAACGAGAGGCTCTCTCTT  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  124  CCAAAGCATAGACAATCACCTGGTGTTTGTTCTCTTTGTCTTAACGAGAGGCTCTCTCTT  183

Query  181  TTTATCAAAGCAGCTTCTTCACGTAGACCAAGATCTCGTCAAAtcttgtctacttcttcc  240
            ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct  184  TTTATCAAAGCAGCTTCTTCACGTAGACCAAGATCTCGTCAAATCTTGTGTTCTTCTTCC  243

Query  241  tcaactacttcctctctttcatctgacggttcttcttctgtctcttcttgtccttctccT  300
            |||||||||||||||||||| ||| | |||||||||||||| ||||||||||||||||||
Sbjct  244  TCAACTACTTCCTCTCTTTCTTCTTATGGTTCTTCTTCTGTGTCTTCTTGTCCTTCTCCT  303

Query  301  ATTGTTGATCGCCGACGATACTTGTTAATGTCCGGAGGCAGCGGTAGAGGAGAGAAAGTG  360
             ||||||| |||||| |||||||| || ||||||||||||||||||||||||||||||||
Sbjct  304  CTTGTTGAACGCCGAAGATACTTGGTAGTGTCCGGAGGCAGCGGTAGAGGAGAGAAAGTG  363

Query  361  ATTTCGTGGATGACGAAAAGCCGATCCGTAGCTTATAAAGTGGATGATGAGAAAAGAA-G  419
            |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct  364  ATTTCGTGGATGACGAAAAGCCGATCTGTAGCTTATAAAGTGGATGATGAGAAAAGAAAG  423

Query  420  --GAAGAAGAAGA---CAAAGACGAATAGTGGTTTCTTTTTTGGTTTGGTAATGGGCACA  474
              |||||||||||   |||||||||| ||||||||||||||| |||| ||||||||| ||
Sbjct  424  AAGAAGAAGAAGAAGACAAAGACGAAAAGTGGTTTCTTTTTTAGTTTTGTAATGGGCTCA  483

Query  475  AAGAAGAGACAATAAGATAGTCAGTCTTGTAgatttgttagattagattgtt  526
            | |||| ||| |||||| |||  || | ||||||| ||||||||||||||||
Sbjct  484  A-GAAGGGACGATAAGAGAGT--GT-T-GTAGATTCGTTAGATTAGATTGTT  530



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27677237742


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5