BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G35230.1
Length=615
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473665 jgi|Araly1|473665|fgenesh2_kg.1__3619__AT1G35230.1 710 0.0
> Ahg473665 jgi|Araly1|473665|fgenesh2_kg.1__3619__AT1G35230.1
Length=574
Score = 710 bits (384), Expect = 0.0
Identities = 522/587 (89%), Gaps = 15/587 (3%)
Strand=Plus/Plus
Query 31 TAACAATGGCCTCCAAATCCGTCGTCGTTTTCCTCTTCCTCGCTCTCGTGGCTTCCTCTG 90
||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct 1 TAACAATGGCCTCAAAATCCGTCGTCGTTTTCCTCTTCCTCGCTCTTGTGGCCTCCTCCG 60
Query 91 TCGTTGCTCAAGCTCCCGGACCAGCTCCGACCATATCTCCCTTGCCAGCCACTCCTACAC 150
|||||||||||||||| ||||||||||| |||||||||||| | ||||| |||||| |||
Sbjct 61 TCGTTGCTCAAGCTCCGGGACCAGCTCCAACCATATCTCCCCTCCCAGCTACTCCTCCAC 120
Query 151 CGTCTCAATCGCCTAGAGCCACCGCACCGGCACCTTCACCATCAGCCAATCCTCCTCCCT 210
|||||||||| |||||||||||| |||||||||| ||||| ||||||||||||||| |||
Sbjct 121 CGTCTCAATCTCCTAGAGCCACCACACCGGCACCATCACCCTCAGCCAATCCTCCTTCCT 180
Query 211 CAGCTCCTACCACTGCTCCTCCGGTTAGTCAGCCGCCTACTGAATCTCCACCAGCTCCTC 270
||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 181 CAGCTCCTACCACCGCTCCTCCGGTTAGTCAGCCGCCGACTGAATCTCCGCCAGCTCCTC 240
Query 271 CGACGTCTACTTCCCCAT-CCGGAGCTCCGGGCACAAATGTTCCGTCTGGAGAAGCTGGA 329
||||||||||| |||| | | ||| |||| ||||||| |||||| ||||| |||||||||
Sbjct 241 CGACGTCTACTACCCC-TGCAGGATCTCCTGGCACAACTGTTCCCTCTGGTGAAGCTGGA 299
Query 330 CCTGCTCAGTCTCCCCTAAGTGGCTCTCCAAACGCAGCTGCAGTTAGCAGAGTCTCCCTC 389
|||||||||||||||| |||||||||||| ||||| ||| |||| |||||||| ||| ||
Sbjct 300 CCTGCTCAGTCTCCCCCAAGTGGCTCTCCTAACGCCGCTTCAGTGAGCAGAGTTTCCATC 359
Query 390 GTCGGAACTTTCGCCGGAGTGGCCGTGATCGCCGCTTTGTTGCTGTAGAGGCTATTGACC 449
|||||||||||||||||||| |||||||||| |||||| |||||||||| || ||||||
Sbjct 360 GTCGGAACTTTCGCCGGAGTCGCCGTGATCGGCGCTTTTTTGCTGTAGATACTTTTGACC 419
Query 450 CATCGAATAGATTCACTAGGAATTATTTTTGGGTTCATTGTTTGTCCTTTTGTTACTATT 509
||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 420 CATTGAATAGATTCACTAGGAATTATTTTTGGGTTCATTATTTGTCATTTTGTTACTATT 479
Query 510 TAATTATGTAGTTTATAGTGTTTTATATGATGCTTTATTATCG-TGTTATTGTTGGTGTT 568
|||||| | || || || |||||| | || ||||| || | || | |||||||| ||
Sbjct 480 TAATTA---A-TT-AT-GTAATTTATA-G-TGTTTTAT-AT-GATGCT-TTGTTGGTTTT 528
Query 569 ATATTTGTTACAAtttttttATAGTTTCCTTGATTATTGGCATTCTT 615
||||||||||||| || || ||| |||||||||||||| ||||||||
Sbjct 529 ATATTTGTTACAAGTTCTT-ATAATTTCCTTGATTATTAGCATTCTT 574
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22492521030
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5