BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G35250.1
Length=686
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913375 jgi|Araly1|913375|Al_scaffold_0001_3629 815 0.0
Ahg913382 jgi|Araly1|913382|Al_scaffold_0001_3636 553 7e-157
Ahg922673 jgi|Araly1|922673|scaffold_103954.1 516 9e-146
Ahg475946 jgi|Araly1|475946|fgenesh2_kg.2__1076__AT1G68280.1 496 1e-139
> Ahg913375 jgi|Araly1|913375|Al_scaffold_0001_3629
Length=567
Score = 815 bits (441), Expect = 0.0
Identities = 527/569 (93%), Gaps = 4/569 (1%)
Strand=Plus/Plus
Query 15 ATGTTTCAAGCTACCAGCACGGGGGCT-CAGATTATGCATGCGGCGTTTCCCCGTTCTTG 73
||||||||||||||| ||| || |||| ||| ||||||||| || |||||||||||||||
Sbjct 1 ATGTTTCAAGCTACCGGCATGGCGGCTCCAG-TTATGCATGTGGTGTTTCCCCGTTCTTG 59
Query 74 GAGGCGAGGGCATGTCCTGCCTCTCCGGAGTGCAAAAATCTTCAAGCCCCTCGCATGTCT 133
||||||| ||||| |||||||||||||||| ||||||| ||| || ||||| ||||||||
Sbjct 60 GAGGCGACGGCATATCCTGCCTCTCCGGAGCGCAAAAACCTTTAAACCCCTTGCATGTCT 119
Query 134 CGAACTCAGAGGAAGCACAGGAATTGGTGGGTTCCATGAGATTGAACTTAAAGTTCGTGA 193
||| | |||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 120 TGAATTGAGAGGAAGCAAAGGAATAAGTGGGTTCCATGAGATTGAACTTAAAGTTCGTGA 179
Query 194 TTATGAATTGGATCAGTTTGGTGTTGTGAACAATGCTGTTTACGCAAACTACTGCCAACA 253
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 180 TTATGAATTGGATCAGTTTGGTGTTGTGAACAATGCTGTTTACGCAAACTACTGTCAACA 239
Query 254 CGGTCGACACGAGTTTATGGATAGTATCGGTATCAACTGTAATGAAGTATCCCGTTCTGG 313
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 240 CGGTCGACACGAGTTTATGGATAGTATCGGTATCAACTGTAATGAAGTATACCGTTCTGG 299
Query 314 TGGAGCCTTGGCAATTCCTGAGTTAACAATAAAGTTCCTTGCACCTTTACGTAGTGGATG 373
|||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||
Sbjct 300 TGGAGCCTTGGCAATTCCTGAGTTGACAATAAAGTTCCTCGCACATTTACGTAGTGGATG 359
Query 374 TAGGTTTGTGGTGAAAACGAGGATATCGGGGATATCTTTGGTGCGCATTTACTTTGAACA 433
|||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||
Sbjct 360 CAGGTTTGTGGTGAAAACGAGGATATCTGGGCTATCTGTGGTGCGCATTTACTTTGAACA 419
Query 434 GTTCATCTTTAAACTTCCAAATCAAGAGCCTATTTTGGAGGCAAAAGGAACGGCTGTGTG 493
||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 420 ATTCATCTTTAACCTTCCAAATCAAGAGCCTATTTTGGAGGCTAAAGGAACAGCTGTGTG 479
Query 494 GCTTGACAACAAGTACCGGCCTACTCGTGTCCCATCTCATGTACGCTCATATTTTGGTCA 553
|||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||
Sbjct 480 GCTTGACAACAAGTACCGCCCTGCTCGTGTCCCATCTCAAGTACGCTCATATTTTGGTCA 539
Query 554 CTTCCAGTGTCAACAC-TTGGTCGATTGA 581
||| || | |||||| ||| ||||||||
Sbjct 540 CTTTCAACGCCAACACGTTG-TCGATTGA 567
> Ahg913382 jgi|Araly1|913382|Al_scaffold_0001_3636
Length=570
Score = 553 bits (299), Expect = 7e-157
Identities = 410/462 (89%), Gaps = 13/462 (3%)
Strand=Plus/Plus
Query 113 CTTCAAGCCCCTCGCATGTCTCGAACTCAGAGGAAGCACAGGAATTG-GTGGGTTCCATG 171
||||||||| |||||||| |||||||| | | || ||| ||||| | || | |||| ||
Sbjct 99 CTTCAAGCCTCTCGCATGCCTCGAACTAAAAAGAGGCAAAGGAA-AGAGTAGTTTCCCTG 157
Query 172 AGATTGAACTTAAAGTTCGTGATTATGAATTGGATCAGTTTGGTGTTGTGAACAATGCTG 231
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 158 AGATTGAACTTAAAGTTCGCGATTATGAATTGGATCCGTTTGGTGTTGTGAACAATGCTG 217
Query 232 TTTACGCAAACTACTGCCAACACGGTCGACACGAGTTTATGGATAGTATCGGTATCAACT 291
|||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 218 TTTATGCAAACTACTGCCAACACGGTCGACACGAGTTCATGGAGAGTATCGGTATCAACT 277
Query 292 GTAATGAAGTATCCCGTTCTGGTGGAGCCTTGGCAATTCCTGAGTTAACAATAAAGTTCC 351
|| ||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||
Sbjct 278 GTGATGAAGTATCCCGTTCTGGTGAAGCCTTGGCAATTTCTGAGTTTACAATAAAGTTCC 337
Query 352 TTGCACCTTTACGT-AG--TGGATGTAGGTTTGTGGTGAAAACGAGGATATCGGG-GATA 407
||||||||||||| || |||||| | ||||| ||||| | ||||||||||| | ||
Sbjct 338 TTGCACCTTTACGACAGAGTGGATGCAAATTTGTAATGAAATCAAGGATATCGGGAG-TA 396
Query 408 TCTT-TGGTGCGCATTTACTTTGAACAGTTCATCTTTAAACTTCCAAATCAAGAGCCTAT 466
| || ||| |||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 397 T-TTGTGGCACGCATTTACTTTGAACAGTTCATCTTCAAACTTCCAAATCTAGAGCCTAT 455
Query 467 TTTGGAGGCAAAAGGAAC-GGCTGTGTGGCTTGACAACAAGTACCGGCCTACTCGTGTCC 525
|||||||||||||||||| || |||||||||||||||||||||||| ||| |||||||||
Sbjct 456 TTTGGAGGCAAAAGGAACCGG-TGTGTGGCTTGACAACAAGTACCGACCTGCTCGTGTCC 514
Query 526 CATCTCATGTACGCTCAT-ATTTTGGTCACTTCCAGTGTCAA 566
|||||||| ||||||| | |||| | ||||||||| |||||
Sbjct 515 CATCTCATATACGCTC-TCATTTCGTTCACTTCCAACGTCAA 555
> Ahg922673 jgi|Araly1|922673|scaffold_103954.1
Length=661
Score = 516 bits (279), Expect = 9e-146
Identities = 389/442 (88%), Gaps = 8/442 (2%)
Strand=Plus/Plus
Query 59 GTTTCCCCGTTCTTGGAGGCGAGGGCATGTCCTGCCTCTCCGGAGTGCAAAAATCTTCAA 118
||||||||||| || ||| ||| | ||||||||||||||| || ||||| | ||||||
Sbjct 77 GTTTCCCCGTTTTTTGAGTCGACAACTTGTCCTGCCTCTCCGAAGCGCAAAGACCTTCAA 136
Query 119 GCCCCTCGCATGTCTCGAACTCAGAGGAAG-CACAGGAATTG-GTGGGTTCCATGAGATT 176
|| || ||||||||| |||| || | || || ||| | || ||| |||||||||||
Sbjct 137 ACCTCTGGCATGTCTCAAACT--GA-G-AGTCAAAGG-AGTGAATGGACTCCATGAGATT 191
Query 177 GAACTTAAAGTTCGTGATTATGAATTGGATCAGTTTGGTGTTGTGAACAATGCTGTTTAC 236
||||| |||||||| ||||||||||| || || |||||||||| |||||||||||||||
Sbjct 192 GAACTCAAAGTTCGCGATTATGAATTAGACCAATTTGGTGTTGAGAACAATGCTGTTTAT 251
Query 237 GCAAACTACTGCCAACACGGTCGACACGAGTTTATGGATAGTATCGGTATCAACTGTAAT 296
|||||||||||||||||||||| ||||||||||||| | |||||||||||||||||| ||
Sbjct 252 GCAAACTACTGCCAACACGGTCAACACGAGTTTATGAAGAGTATCGGTATCAACTGTGAT 311
Query 297 GAAGTATCCCGTTCTGGTGGAGCCTTGGCAATTCCTGAGTTAACAATAAAGTTCCTTGCA 356
||||||||||||||||||| |||||||||| || ||||||| ||||||||||| ||||||
Sbjct 312 GAAGTATCCCGTTCTGGTGAAGCCTTGGCAGTTTCTGAGTTGACAATAAAGTTTCTTGCA 371
Query 357 CCTTTACGTAGTGGATGTAGGTTTGTGGTGAAAACGAGGATATCGGGGATATCTTTGGTG 416
|||||||| |||||||| | ||||||||||||||||||||||||||||| ||| ||| |
Sbjct 372 CCTTTACGAAGTGGATGCAAGTTTGTGGTGAAAACGAGGATATCGGGGACATCCGTGGCG 431
Query 417 CGCATTTACTTTGAACAGTTCATCTTTAAACTTCCAAATCAAGAGCCTATTTTGGAGGCA 476
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 432 CGCATTTACTATGAACAGTTCATCTTTAAACTTCCAAATCAAGAGCCTATTTTGGAGGCA 491
Query 477 AAAGGAACGGCTGTGTGGCTTG 498
|||||||||| ||||||| |||
Sbjct 492 AAAGGAACGGTTGTGTGG-TTG 512
> Ahg475946 jgi|Araly1|475946|fgenesh2_kg.2__1076__AT1G68280.1
Length=573
Score = 496 bits (268), Expect = 1e-139
Identities = 407/473 (86%), Gaps = 14/473 (3%)
Strand=Plus/Plus
Query 93 CCTCTCCGGAGTGCAAAAATCTTCAAGCCCCTCGCATGTCTCGAACTCAGAGGAAGCACA 152
||||||||||| ||||| | ||||||||| ||||||| |||||| || | |||| ||| |
Sbjct 85 CCTCTCCGGAGCGCAAAGACCTTCAAGCCTCTCGCATTTCTCGATCTTAAAGGAGGCAAA 144
Query 153 GGAATTG-GTGGGTTCCATGAGATTGAACTTAAAGTTCGTGATTATGAATTGGATCAGTT 211
|| | || ||| |||||||||| |||| || |||||||||||||||||||||||||||||
Sbjct 145 GGGA-TGAGTGAGTTCCATGAGGTTGAGCTCAAAGTTCGTGATTATGAATTGGATCAGTT 203
Query 212 TGGTGTTGTGAACAATGCTGTTTACGCAAACTACTGCCAACACGGTCGACACGAGTTTAT 271
|||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
Sbjct 204 TGGTGTTGTGAACAATGCTGTTTACGCAAACTACTGTCAACACGGTCGACATGAGTTTCT 263
Query 272 GGATAGTATCGGTATCAACTGTAATGAAGTATCCCGTTCTGGTGGA-GCCTTGGCAATTC 330
|| |||||||||||||||||| | |||||| | |||||||| ||| ||||| ||||||
Sbjct 264 AGAGAGTATCGGTATCAACTGTGACGAAGTAGCACGTTCTGG-GGAAGCCTTAGCAATTT 322
Query 331 CTGAGTTAACAATAAAGTTCCTTGCACCTTTACGTAGTGGATGT-AGGTTTGTGGTGAAA 389
| ||||| ||||| |||||||||| |||||||||||| ||| | | ||||||||||||
Sbjct 323 CAGAGTTGACAATGAAGTTCCTTGGACCTTTACGTAGCGGA-GACAAATTTGTGGTGAAA 381
Query 390 ACGAGGATATCGGGGATATCTTTGGTGCGC--ATTTACTTTGAACAGTTCATCTTTAAAC 447
| ||||||||||||| |||| | ||||| ||||||||||| || |||||||||||||
Sbjct 382 GCAAGGATATCGGGGACATCT--GCTGCGCGTATTTACTTTGATCATTTCATCTTTAAAC 439
Query 448 TTCCAAATCAAGAGCCTATTTTGGAGGCAAAAGGAACGGCTGTGTGGCTTGACAACAAGT 507
|||| |||||||||||||| |||||||| ||||||| ||||||||||||||||||||||
Sbjct 440 TTCCTAATCAAGAGCCTATATTGGAGGCTAAAGGAATAGCTGTGTGGCTTGACAACAAGT 499
Query 508 ACCGGCCTACTCGTGTCCCATCT-CATGTACGCTC-ATATTTTGGTCACTTCC 558
|||| ||| |||| |||||||| || ||||||| | |||| | ||||||||
Sbjct 500 ACCGTCCTGTTCGTATCCCATCTTCAA-TACGCTCTAAATTT-GTTCACTTCC 550
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25199248137
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5