BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G35260.1
Length=767
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473666 jgi|Araly1|473666|fgenesh2_kg.1__3620__AT1G35260.1 787 0.0
Ahg913378 jgi|Araly1|913378|Al_scaffold_0001_3632 436 8e-122
> Ahg473666 jgi|Araly1|473666|fgenesh2_kg.1__3620__AT1G35260.1
Length=661
Score = 787 bits (426), Expect = 0.0
Identities = 482/510 (95%), Gaps = 0/510 (0%)
Strand=Plus/Plus
Query 94 AAAACATGATAGAAGAGGAGATTGAGGTAGACGTCGATATTAAAACCAGGGCTGACAAGT 153
|||| ||| |||||||||||||||||||||| |||||||| ||||| | |||||| ||||
Sbjct 54 AAAAAATGGTAGAAGAGGAGATTGAGGTAGATGTCGATATCAAAACTACGGCTGATAAGT 113
Query 154 TCCACAAGTTCATCAGAAGATCACAACATGTGCCCAAAGCCACTCACTACATTAAGGGAT 213
|||||| |||||||||||||||||||||||| || |||||||||| ||||||||||||||
Sbjct 114 TCCACATGTTCATCAGAAGATCACAACATGTTCCTAAAGCCACTCGCTACATTAAGGGAT 173
Query 214 GTGATCTGCTCGAAGGCGAGTGGGGAAAAGTTGGAAGCATACTCTTGTGGAAATTAGTTT 273
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 174 GTGATCTGCTCGAAGGCGAGTGGGGCGAAGTTGGAAGCATACTCTTGTGGAAATTAGTTT 233
Query 274 TTGATGGAGAGCCACGAGTGTCAAAGGATATGATCGAGGTAATAGATGAGGAGAAGAATG 333
|||||||||||||| ||||||||||||||||||||||||| || |||| |||||||||||
Sbjct 234 TTGATGGAGAGCCAAGAGTGTCAAAGGATATGATCGAGGTGATGGATGTGGAGAAGAATG 293
Query 334 TGATTCAGTTGAGGGTGTTAGAGGGACCTCTGAAGAAAGAATACAAGAGCTTCCTGAAAA 393
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 294 TGATTCAGTTGAGGGTGTTAGAGGGACCTCTGATGAAAGAGTACAAGAGCTTCCTGAAAA 353
Query 394 CGATGAAAGTGATGAGCCCTAAGCATGGAGGGCCCGGAAGTGTGGTGAAGTGGAACATGA 453
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 354 CGATGAAAGTAATGAGCCCTAAGCATGGAGGGTCCGGAAGTGTGGTGAAGTGGAACATGA 413
Query 454 AATATGAGAGGATTGATCAGAACGTGGATCACCCAAACAGGCTTCTCCAGTTCTTCGTCG 513
| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 414 AGTATGAGAGGATTGATCAGAAGGTGGATCACCCAAAGAGGCTTCTCCAGTTCTTCGTCG 473
Query 514 AAGTGACTAAAGAGATTGACCAATACCTCTTGTCTAAGGATTAATTAGGGGACAGTTCTG 573
||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 474 AAGTGACTAAAGAGATTGACCAATACCTCTTGTCTAATGATTAATTAGGGGACTCTTCTG 533
Query 574 CTTGGCTTATGTGTGGGAGAGTTTTGTATG 603
|||||||| |||||||||||||||||||||
Sbjct 534 CTTGGCTTCTGTGTGGGAGAGTTTTGTATG 563
> Ahg913378 jgi|Araly1|913378|Al_scaffold_0001_3632
Length=351
Score = 436 bits (236), Expect = 8e-122
Identities = 314/351 (89%), Gaps = 7/351 (2%)
Strand=Plus/Plus
Query 208 AGGGATGTGATCTGCTCGAAGGCGAGTGGGGAAAAGTTGGAAGCATACTCTTGTGGAAAT 267
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 5 AGGGATGTGATCTGCTCGAAGGCGAGTGGGGCAAAGTTGGAAGCATACTCTTGTGGAAAT 64
Query 268 TAGTTTTTGATGGAGAGCC-ACGAGTGTCAAAGGATATGATCGAGGTAATAGATGAGGAG 326
|| ||||||||||||||| | ||||||| ||||||| |||||||| || |||| ||||
Sbjct 65 TAACTTTTGATGGAGAGCCGA-GAGTGTCGAAGGATAGGATCGAGGGGATTGATGTGGAG 123
Query 327 AAGAATGTGATTCAGTTGAGGGTGTTAGAGGGACCTCTGAAGAAAGAATACAAGAGCTTC 386
|| |||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 124 AATAATGTGATCCAGTGGAGGGTGTTAGAGGGACCTCTGAAGAAAGAGTACAAGAGCTTC 183
Query 387 CTGAAAACGATGAAAGTGATGAGCCCTAAGCATGGAGGGCCCGGAAGTGTGGTGAAGTGG 446
|||||||||||||||||| | ||||||||| |||||| | ||||||||||||||||||
Sbjct 184 TTGAAAACGATGAAAGTGA-G--CCCTAAGCAAGGAGGGACTGGAAGTGTGGTGAAGTGG 240
Query 447 AACATGAAATATGAGAGGATTGATCAGAACGTGGATCACCCAAACAGGCTTCTCCAGTTC 506
|||||||| ||||||||||||||| |||| |||| ||||||| | ||||| ||| |||||
Sbjct 241 AACATGAAGTATGAGAGGATTGATGAGAAGGTGGTTCACCCAGAGAGGCTGCTCAAGTTC 300
Query 507 TTCGTCGAAGTGACTAAAGA-GATTGACCAATACCTCTTGTCTAAGGATTA 556
|| || ||||||| || ||| | |||||||||||||||||||| |||||||
Sbjct 301 TTTGTTGAAGTGATTACAGAAG-TTGACCAATACCTCTTGTCTGAGGATTA 350
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28287204414
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5