BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G35290.1
Length=849
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922673 jgi|Araly1|922673|scaffold_103954.1 638 0.0
Ahg913375 jgi|Araly1|913375|Al_scaffold_0001_3629 597 4e-170
Ahg913382 jgi|Araly1|913382|Al_scaffold_0001_3636 534 3e-151
> Ahg922673 jgi|Araly1|922673|scaffold_103954.1
Length=661
Score = 638 bits (345), Expect = 0.0
Identities = 540/628 (86%), Gaps = 38/628 (6%)
Strand=Plus/Plus
Query 48 CACTCGAAGAAGTGCAATGCTTAAAGCTACCGG-CACAGTGGCTCCGGCTA------TG- 99
|||||||||||||| |||| || ||||| ||| ||| | ||||| ||||| ||
Sbjct 8 CACTCGAAGAAGTGTAATGTTTCAAGCT-GCGGCCACGGCGGCTCAGGCTATGCCTGTGC 66
Query 100 --CACGTGGTGTTTCCCTGTTTTTCGAGTCGACCGCTTATCCTACCTCTCCGGAGCACAA 157
||||||| ||||||| |||||| |||||||| ||| |||| |||||||| ||| |||
Sbjct 67 AACACGTGGGGTTTCCCCGTTTTTTGAGTCGACAACTTGTCCTGCCTCTCCGAAGCGCAA 126
Query 158 AGACCTTCAAACCTCTCTCATGTTTCAAACAGCAAGGAGGCAAAGGAATGAATGGAGTCC 217
|||||||||||||||| ||||| |||||| | | ||| ||||||| |||||||| |||
Sbjct 127 AGACCTTCAAACCTCTGGCATGTCTCAAACTG--A-GAGTCAAAGGAGTGAATGGACTCC 183
Query 218 ATGAGATTGAACTTAAAGTTCGTGATTATGAATTAGACCAATTTGGTGTTGTGAACAACG 277
||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||| |
Sbjct 184 ATGAGATTGAACTCAAAGTTCGCGATTATGAATTAGACCAATTTGGTGTTGAGAACAATG 243
Query 278 CTGTTTATGCAAACTACTGCCAACACGGTCAACACGAGTTTATGGAGACTATCGGTATCA 337
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 244 CTGTTTATGCAAACTACTGCCAACACGGTCAACACGAGTTTATGAAGAGTATCGGTATCA 303
Query 338 ACTGTGATGAAGTGTCCCGTTCTGGTGAAGCATTGGCAGTTTCTGAATTGACAATAAAGT 397
||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 304 ACTGTGATGAAGTATCCCGTTCTGGTGAAGCCTTGGCAGTTTCTGAGTTGACAATAAAGT 363
Query 398 TTCTTGCACCTTTACGTAGTGGATGCAAGTTTGTGGTGAAAACGAGGATATCGGGGACAT 457
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 TTCTTGCACCTTTACGAAGTGGATGCAAGTTTGTGGTGAAAACGAGGATATCGGGGACAT 423
Query 458 CTATGACGCGCATTTACTTTGAACAGTTCATCTTTAAACTTCCAAATCAAGAGCCTATTT 517
| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 424 CCGTGGCGCGCATTTACTATGAACAGTTCATCTTTAAACTTCCAAATCAAGAGCCTATTT 483
Query 518 TGGAGGCAAAAGGAATGGCTGTGTGGCTTGACAAGAGGTACCGTCCTGTTTGTATCCCGT 577
||||||||||||||| || ||||||| ||| | || || |||||||
Sbjct 484 TGGAGGCAAAAGGAACGGTTGTGTGG-TTG--------T----TC--GT----ATCCCGT 524
Query 578 CTTACATACGCTCTAATTTCGGTCACTTCCAACGTCAACACGTTGTCGAAT-AT--TG-A 633
|||||||||||| ||| ||| ||||||||||||| ||||| ||| | || | || || |
Sbjct 525 CTTACATACGCTTTAAGTTCAGTCACTTCCAACGCCAACATGTTTTTGATTGATCATGCA 584
Query 634 -TCTAGGGCTCGACAAAATATTTGTTAT 660
||| ||||||||||||| |||| ||||
Sbjct 585 CTCTTGGGCTCGACAAAACATTTTTTAT 612
> Ahg913375 jgi|Araly1|913375|Al_scaffold_0001_3629
Length=567
Score = 597 bits (323), Expect = 4e-170
Identities = 491/571 (86%), Gaps = 16/571 (3%)
Strand=Plus/Plus
Query 64 ATGCTTAAAGCTACCGGCACAGTGGCTCCGGCTATGCACGTGGTGTTTCCCTGTTTTTCG 123
||| || |||||||||||| | |||||| | |||||| |||||||||||| ||| || |
Sbjct 1 ATGTTTCAAGCTACCGGCATGGCGGCTCCAGTTATGCATGTGGTGTTTCCCCGTTCTTGG 60
Query 124 AGTCGACCGCTTATCCTACCTCTCCGGAGCACAAAGACCTTCAAACCTCTCT-CATGT-T 181
|| |||| || |||||| |||||||||||| |||| ||||| ||||| || | ||||| |
Sbjct 61 AGGCGACGGCATATCCTGCCTCTCCGGAGCGCAAAAACCTTTAAACCCCT-TGCATGTCT 119
Query 182 TCAAACAGCA-AGGAGGCAAAGGAATGAA-TGGAG-TCCATGAGATTGAACTTAAAGTTC 238
| || | | |||| |||||||||| || ||| | ||||||||||||||||||||||||
Sbjct 120 T-GAATTG-AGAGGAAGCAAAGGAAT-AAGTGG-GTTCCATGAGATTGAACTTAAAGTTC 175
Query 239 GTGATTATGAATTAGACCAATTTGGTGTTGTGAACAACGCTGTTTATGCAAACTACTGCC 298
||||||||||||| || || ||||||||||||||||| |||||||| ||||||||||| |
Sbjct 176 GTGATTATGAATTGGATCAGTTTGGTGTTGTGAACAATGCTGTTTACGCAAACTACTGTC 235
Query 299 AACACGGTCAACACGAGTTTATGGAGACTATCGGTATCAACTGTGATGAAGTGTCCCGTT 358
||||||||| ||||||||||||||| | |||||||||||||||| ||||||| | |||||
Sbjct 236 AACACGGTCGACACGAGTTTATGGATAGTATCGGTATCAACTGTAATGAAGTATACCGTT 295
Query 359 CTGGTGAAGCATTGGCAGTTTCTGAATTGACAATAAAGTTTCTTGCACCTTTACGTAGTG 418
|||||| ||| |||||| || |||| |||||||||||||| || |||| |||||||||||
Sbjct 296 CTGGTGGAGCCTTGGCAATTCCTGAGTTGACAATAAAGTTCCTCGCACATTTACGTAGTG 355
Query 419 GATGCAAGTTTGTGGTGAAAACGAGGATATCGGGGAC-ATCTATGACGCGCATTTACTTT 477
|||||| |||||||||||||||||||||||| ||| | |||| || |||||||||||||
Sbjct 356 GATGCAGGTTTGTGGTGAAAACGAGGATATCTGGG-CTATCTGTGGTGCGCATTTACTTT 414
Query 478 GAACAGTTCATCTTTAAACTTCCAAATCAAGAGCCTATTTTGGAGGCAAAAGGAATGGCT 537
||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||| |||
Sbjct 415 GAACAATTCATCTTTAACCTTCCAAATCAAGAGCCTATTTTGGAGGCTAAAGGAACAGCT 474
Query 538 GTGTGGCTTGACAAGAGGTACCGTCCTGTTTGTATCCCGTCTTACA-TACGCTC-TAATT 595
|||||||||||||| | |||||| |||| | || |||| ||| | | ||||||| || ||
Sbjct 475 GTGTGGCTTGACAACAAGTACCGCCCTGCTCGTGTCCCATCTCA-AGTACGCTCATATTT 533
Query 596 TCGGTCACTTCCAACGTCAACACGTTGTCGA 626
| |||||||| ||||| ||||||||||||||
Sbjct 534 T-GGTCACTTTCAACGCCAACACGTTGTCGA 563
> Ahg913382 jgi|Araly1|913382|Al_scaffold_0001_3636
Length=570
Score = 534 bits (289), Expect = 3e-151
Identities = 474/562 (84%), Gaps = 17/562 (3%)
Strand=Plus/Plus
Query 64 ATGCTTAAAGCTACCGGCACAGTGGCTCCGGCTATGCACGTGGTGTTTCCCTGTTTTTCG 123
||| || ||||||| |||| | |||||||| ||||| || ||||||| |||| ||
Sbjct 1 ATGTTTCAAGCTACTGGCAGGGCAGCTCCGGCAATGCATGTAATGTTTCCATGTTCGTCA 60
Query 124 AGTCGACC-GCTTATCCTACC-TCTCCGGAGCAC-AAAGACCTTCAAACCTCTCTCATGT 180
|| |||| | ||||| | || |||||||| | | || ||||||||| |||||| ||||
Sbjct 61 AGGAGACCAG-TTATCAT-CCTTCTCCGGAAC-CTAACGACCTTCAAGCCTCTCGCATGC 117
Query 181 TTCAAAC-AGCAAGGAGGCAAAGGAATGAATGGAGTCCATGAGATTGAACTTAAAGTTCG 239
|| ||| | || |||||||||||| || | | ||| |||||||||||||||||||||
Sbjct 118 CTCGAACTA-AAAAGAGGCAAAGGAAAGAGTAGTTTCCCTGAGATTGAACTTAAAGTTCG 176
Query 240 TGATTATGAATTAGA-CCAATTTGGTGTTGTGAACAACGCTGTTTATGCAAACTACTGCC 298
||||||||||| || || ||||||||||||||||| ||||||||||||||||||||||
Sbjct 177 CGATTATGAATTGGATCC-GTTTGGTGTTGTGAACAATGCTGTTTATGCAAACTACTGCC 235
Query 299 AACACGGTCAACACGAGTTTATGGAGACTATCGGTATCAACTGTGATGAAGTGTCCCGTT 358
||||||||| ||||||||| ||||||| |||||||||||||||||||||||| |||||||
Sbjct 236 AACACGGTCGACACGAGTTCATGGAGAGTATCGGTATCAACTGTGATGAAGTATCCCGTT 295
Query 359 CTGGTGAAGCATTGGCAGTTTCTGAATTGACAATAAAGTTTCTTGCACCTTTACGT-AG- 416
|||||||||| |||||| ||||||| || ||||||||||| |||||||||||||| ||
Sbjct 296 CTGGTGAAGCCTTGGCAATTTCTGAGTTTACAATAAAGTTCCTTGCACCTTTACGACAGA 355
Query 417 -TGGATGCAAGTTTGTGGTGAAAACGAGGATATCGGG-GACATCTATGACGCGCATTTAC 474
||||||||| ||||| ||||| | ||||||||||| | || | || | |||||||||
Sbjct 356 GTGGATGCAAATTTGTAATGAAATCAAGGATATCGGGAGT-ATTTGTGGCACGCATTTAC 414
Query 475 TTTGAACAGTTCATCTTTAAACTTCCAAATCAAGAGCCTATTTTGGAGGCAAAAGGAAT- 533
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 415 TTTGAACAGTTCATCTTCAAACTTCCAAATCTAGAGCCTATTTTGGAGGCAAAAGGAACC 474
Query 534 GGCTGTGTGGCTTGACAAGAGGTACCGTCCTGTTTGTATCCCGTCTTACATACGCTCTAA 593
|| ||||||||||||||| | |||||| |||| | || |||| ||| | ||||||||| |
Sbjct 475 GG-TGTGTGGCTTGACAACAAGTACCGACCTGCTCGTGTCCCATCTCATATACGCTCTCA 533
Query 594 TTTCGGTCACTTCCAACGTCAA 615
||||| ||||||||||||||||
Sbjct 534 TTTCGTTCACTTCCAACGTCAA 555
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31413283608
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5