BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G35310.1
Length=791
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473666 jgi|Araly1|473666|fgenesh2_kg.1__3620__AT1G35260.1 544 5e-154
Ahg913378 jgi|Araly1|913378|Al_scaffold_0001_3632 442 2e-123
> Ahg473666 jgi|Araly1|473666|fgenesh2_kg.1__3620__AT1G35260.1
Length=661
Score = 544 bits (294), Expect = 5e-154
Identities = 448/519 (86%), Gaps = 23/519 (4%)
Strand=Plus/Plus
Query 61 TAAAAAATGGTAGAGGCA-GAGGTTGAAGTAGATGTGGAAATCAAATCTACGGCTGATAA 119
|||||||||||||| | | ||| |||| |||||||| || |||||| |||||||||||||
Sbjct 53 TAAAAAATGGTAGAAG-AGGAGATTGAGGTAGATGTCGATATCAAAACTACGGCTGATAA 111
Query 120 GTTTTTCATGTTC-TCTAGAAGATCACAACATGCCTCC-AAAGCCACTCGCT--ATGTAC 175
||| ||||||| || |||||||||||||||| ||| ||||||||||||| || ||
Sbjct 112 GTTCCACATGTTCATC-AGAAGATCACAACATG-TTCCTAAAGCCACTCGCTACAT-TA- 167
Query 176 AGGGATGTGATCTGCTCGAAGGCGAGTGGGGCGAAGTTGGAAGCATACTCTTGTGGAAAT 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 168 AGGGATGTGATCTGCTCGAAGGCGAGTGGGGCGAAGTTGGAAGCATACTCTTGTGGAAAT 227
Query 236 TAACTGTTGATGGAGAGCCAAAAGTGTCAAAGGATATGATTGAGGCGATTGATATGAAGA 295
|| | ||||||||||||||| |||||||||||||||||| |||| ||| ||| || |||
Sbjct 228 TAGTTTTTGATGGAGAGCCAAGAGTGTCAAAGGATATGATCGAGGTGATGGATGTGGAGA 287
Query 296 TGAATATGATCCAGTGGAGGGTGTTAGAGGGACCTCTGAAGGAAGAGTACAATATTTTC- 354
|||| |||| |||| ||||||||||||||||||||||| | |||||||||| | |||
Sbjct 288 AGAATGTGATTCAGTTGAGGGTGTTAGAGGGACCTCTGATGAAAGAGTACAAGAGCTTCC 347
Query 355 TCGAAAACGATGAAAGTAA-G--CCCTAAGCAAGGAGGGTCTGGAAGTGTGGTGAAGTGG 411
| ||||||||||||||||| | ||||||||| |||||||| ||||||||||||||||||
Sbjct 348 T-GAAAACGATGAAAGTAATGAGCCCTAAGCATGGAGGGTCCGGAAGTGTGGTGAAGTGG 406
Query 412 AACTTGAAGTATGAGAGAATTGATGAGAAGGTGGCTCACCTAGAGAGGCTCCTTCAGTTC 471
||| ||||||||||||| |||||| ||||||||| ||||| | ||||||| || ||||||
Sbjct 407 AACATGAAGTATGAGAGGATTGATCAGAAGGTGGATCACCCAAAGAGGCTTCTCCAGTTC 466
Query 472 TTCGTCGAATGTGT-TAACGAGATTGACCAATACCTATTGTCTGAGGGTTA----GGG-A 525
||||||||| ||| ||| ||||||||||||||||| |||||| | | ||| ||| |
Sbjct 467 TTCGTCGAA-GTGACTAAAGAGATTGACCAATACCTCTTGTCTAATGATTAATTAGGGGA 525
Query 526 CTTTTCTCCCTGGCTTATGTGTGGGAGAGTTATTGTATG 564
|| |||| | |||||| |||||||||||||| |||||||
Sbjct 526 CTCTTCTGCTTGGCTTCTGTGTGGGAGAGTT-TTGTATG 563
> Ahg913378 jgi|Araly1|913378|Al_scaffold_0001_3632
Length=351
Score = 442 bits (239), Expect = 2e-123
Identities = 318/355 (90%), Gaps = 10/355 (3%)
Strand=Plus/Plus
Query 173 TACAGGGATGTGATCTGCTCGAAGGCGAGTGGGGCGAAGTTGGAAGCATACTCTTGTGGA 232
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2 TACAGGGATGTGATCTGCTCGAAGGCGAGTGGGGCAAAGTTGGAAGCATACTCTTGTGGA 61
Query 233 AATTAACTGTTGATGGAGAGCCAAAAGTGTCAAAGGATATGATTGAGGCGATTGATATGA 292
|||||||| ||||||||||||| | |||||| ||||||| ||| |||| ||||||| ||
Sbjct 62 AATTAACTTTTGATGGAGAGCCGAGAGTGTCGAAGGATAGGATCGAGGGGATTGATGTGG 121
Query 293 AG-ATGAATATGATCCAGTGGAGGGTGTTAGAGGGACCTCTGAAGGAAGAGTACAATATT 351
|| || ||| ||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 122 AGAAT-AATGTGATCCAGTGGAGGGTGTTAGAGGGACCTCTGAAGAAAGAGTACAAGAGC 180
Query 352 TTCTCGAAAACGATGAAAGTAAGCCCTAAGCAAGGAGGGTCTGGAAGTGTGGTGAAGTGG 411
|||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 181 TTCTTGAAAACGATGAAAGTGAGCCCTAAGCAAGGAGGGACTGGAAGTGTGGTGAAGTGG 240
Query 412 AACTTGAAGTATGAGAGAATTGATGAGAAGGTGGCTCACCTAGAGAGGCTCCTTCA-GTT 470
||| ||||||||||||| |||||||||||||||| ||||| ||||||||| || || |||
Sbjct 241 AACATGAAGTATGAGAGGATTGATGAGAAGGTGGTTCACCCAGAGAGGCTGCT-CAAGTT 299
Query 471 CTTCGTCGAATGTG-TTA-ACGA-GATTGACCAATACCTATTGTCTGAGGGTTAG 522
||| || ||| ||| ||| | || | ||||||||||||| |||||||||| ||||
Sbjct 300 CTTTGTTGAA-GTGATTACA-GAAG-TTGACCAATACCTCTTGTCTGAGGATTAG 351
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29202154422
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5