BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G35330.1
Length=984
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913385 jgi|Araly1|913385|Al_scaffold_0001_3639 1336 0.0
> Ahg913385 jgi|Araly1|913385|Al_scaffold_0001_3639
Length=987
Score = 1336 bits (723), Expect = 0.0
Identities = 902/989 (91%), Gaps = 9/989 (1%)
Strand=Plus/Plus
Query 1 ATGACAATCGGGAAGAGTCCGATCTTGCTACATCATCATGTTATCTTCCTATTGTTGCTT 60
||||||||||| ||||||||||||||| || |||||||||| |||||||||||||||||
Sbjct 1 ATGACAATCGGAAAGAGTCCGATCTTGGGACGTCATCATGTTGTCTTCCTATTGTTGCTT 60
Query 61 GTTCTCCAAGTCAGTGGCCAGCATCAGCCTAGAACCACTGCTCCACCGTATATTGCCCAA 120
||||||||||||| |||||||| ||||| |||||| || ||||||||||| |||||||
Sbjct 61 GTTCTCCAAGTCACCGGCCAGCAGAAGCCTGGAACCATTGGTCCACCGTATAGTGCCCAA 120
Query 121 AGACC-AAATCAAGTACCCGCAGTAATCATTGCGATGCTTATGTTCACGCTCTTATTCAG 179
||||| ||| ||| ||||||| |||||||||| |||||||||||||||||| ||||||||
Sbjct 121 AGACCGAAA-CAAATACCCGCGGTAATCATTGGGATGCTTATGTTCACGCTTTTATTCAG 179
Query 180 CATGTTGGCTTGTTGTGTTTG-TTATAAATACACAAACACATCTCCTCATGGAACCAGCT 238
| |||| ||||| || ||||| || ||||||||||| ||| |||||||||||||| ||||
Sbjct 180 CTTGTTTGCTTGCTGCGTTTGCTT-TAAATACACAAGCACTTCTCCTCATGGAACTAGCT 238
Query 239 CTGATACCGAAGAGGGAGGTCATGGAGAAGTAGCGTTTACAAGGAGAACAAGCCGTGGAC 298
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 239 CTGATACCGAAGAAGGAGGTCATGGAGAAGTAGCGTTTACGAGGAGAACAAGCCGTGGAC 298
Query 299 TTGGAAAGGATGTGATAAATTCGTTTCCTTCCTTTCTTTACTCACAAGTTAAAGGGCTAA 358
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 299 TTGGAAAGGATGTGATAACGTCTTTTCCTTCCTTTCTTTACTCACAAGTTAAAGGGCTAA 358
Query 359 AGATAGGCAAAGGCGGTGTGGAATGTGCGATCTGCCTGAATGAGTTTGAGGACGAGGAAA 418
|||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| ||||
Sbjct 359 AGATAGGCAAAGGCGGCGTGGAATGTGCCATCTGCCTGAACGAGTTTGAGGACGAAGAAA 418
Query 419 CGCTGCGTTTAATGCCTCCTTGTAGCCATGCATTTCATGCTAGTTGCATTGATGTCTGGC 478
| ||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 419 CATTGCGTTTGATGCCTCCTTGTAGCCATGTATTTCATGCTAGTTGCATAGATGTCTGGC 478
Query 479 TGTCTTCTCGGTCCACATGTCCAGTTTGCCGTGCAAGTCTCCCTCCCAAACCAGGCAGCG 538
| |||||||| ||||||||||| ||||||||||| ||||||| ||||||||||||||| |
Sbjct 479 TCTCTTCTCGCTCCACATGTCCTGTTTGCCGTGCTAGTCTCCTTCCCAAACCAGGCAGTG 538
Query 539 ATCAAAACTCTTTGTATCCATTTATACGCCCACATGATAATCAAGATATGGAT---CTTG 595
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 539 ATCAAATCTCTTTGTATCCATTTATACGCCCACATGATAATCAAGATATGGATGATCTTG 598
Query 596 AAAATGTAACCGCGCGAAGAAGTGTATTGGAGTCTCCAGATGTACGTTTGCTAGATAGAT 655
||| || || ||||||||||||||||||||| ||||||||| || |||| |||||||||
Sbjct 599 AAACTGGAAACGCGCGAAGAAGTGTATTGGAATCTCCAGATCAACATTTGTTAGATAGAT 658
Query 656 TGTCATGGAGCAATAACACCGGGGCAAATACACCGCCTCGATCGAGGTCTACAGGGTTAT 715
|| ||||||||||||||||| ||||||| | ||||||||||||||||||||||||||| |
Sbjct 659 TGACATGGAGCAATAACACCAGGGCAAACAGACCGCCTCGATCGAGGTCTACAGGGTTGT 718
Query 716 CAAACTGGAGAATAACGGAGCTTTTGTTCCCAAGATCCCATTCGACTGGACATTCTCTAG 775
|||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||
Sbjct 719 CAAACTGGAGAATAACGGAGATTTTGTTCCCAAGATCCCATTCAACGGGACATTCTCTAG 778
Query 776 TACCACGTGTAGAAAACCTTGACAGATTCACATTGCAGTTACCGGAAGAAGTACGAAGGC 835
||||| || ||| |||||||||||||| |||||||||||||||||||| ||||| ||||
Sbjct 779 TACCAATTGGAGAGAACCTTGACAGATTTACATTGCAGTTACCGGAAGAGGTACGGAGGC 838
Query 836 AACTGAGCCACATGAAGACGTTACCACAAGCTAGGAGTTCAAGAG-AAGGCTATAGGAGT 894
|| ||||||||| || |||||||||| |||||||||||||||| | |||| ||||||||
Sbjct 839 AATTGAGCCACACGACGACGTTACCAAAAGCTAGGAGTTCAAG-GCAAGGGTATAGGAGC 897
Query 895 GGTAGCGTTGGAAGCGAGAGAAGAGGAAAAGGCAAGGAAAAAGAGTTTGGTGAAGGGTCA 954
||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 898 GGTAGCGTTGGGAGCGAGAGAAGAGCAAAAGGCAAGGAAAGAGAGTTTGGTGAAGGGTCA 957
Query 955 TTTGATCGCCTTAAGGCAGAGATGGTCTA 983
||||||||||||||| |||||||||||||
Sbjct 958 TTTGATCGCCTTAAGCCAGAGATGGTCTA 986
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36559877403
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5