BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G35340.1
Length=1115
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922683 jgi|Araly1|922683|scaffold_103964.1 1415 0.0
> Ahg922683 jgi|Araly1|922683|scaffold_103964.1
Length=923
Score = 1415 bits (766), Expect = 0.0
Identities = 868/919 (94%), Gaps = 0/919 (0%)
Strand=Plus/Plus
Query 53 CTGCGATTCACATTTTCCCGATGACTTCCACTCTAATCTCCTCAAACCTCTCTTCCTCTT 112
||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||
Sbjct 1 CTGCGATTCACATTTTCCCGATGACTTCCGCTTTAATCTCCTCAAATCTCTCTTCCTCTT 60
Query 113 TCTTCCCAACCCAAAATATCCACCGAATTCGAATCCCGACGACTTCAATTCCCGGAAGTT 172
||||||| || ||||| ||||||| |||||||||||| ||||||||||||||||| |||
Sbjct 61 TCTTCCCTACTAAAAATCTCCACCGGATTCGAATCCCGGCGACTTCAATTCCCGGAGGTT 120
Query 173 TCAACATTCGCGCACGCCGTTCAAAAATCGTCGCCAAATCTCTCGATCTTCCTCTTCTTC 232
|||||||||||||||||||||||||||||||||| ||||| ||| ||||||| |||||||
Sbjct 121 TCAACATTCGCGCACGCCGTTCAAAAATCGTCGCGAAATCACTCAATCTTCCACTTCTTC 180
Query 233 CTTTTAGCATGAGCGAGGTTCTTGTACCAACGGAGAGTAAAACTTTGCATTTATATGAAG 292
| || |||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 181 CCTTCAGCATGAGCGAGGTTCTTGTACCAACGGAGAGTACAACTTTGCATTTGTATGAAG 240
Query 293 CTAGGTACTTAGCTTTACTCGAAGAGTCTATGAAGAGAAAGAAGAATATGTTTGTTCATT 352
| ||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||
Sbjct 241 CAAGGTACTTAGCTTTACTTGAAGAGTCGATGAAGAGGAAGAAGAATATGTTTGTTCATT 300
Query 353 TCATTCTAGATCCTATTTCGATTAGTGAGACTGCAACAGAAGCTTCTTTTGCTGCTAGAT 412
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCATTCTGGATCCTATTTCGATTAGTGAGACTGCAACAGAAGCTTCTTTTGCTGCTAGAT 360
Query 413 ATGGTTGCTTGGTACTTATTGAAAACGTTGAGAGATTGGATGTTGGTGCACTTGTTTCGA 472
|||| || |||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 361 ATGGATGTTTGGTACTTATTGAAAACGTTGAGAGATTGGATGTTGGCGCGCTTGTTTCGA 420
Query 473 TAAGAGGCGCGGGTCGTGTGAAGATTTCGAGGTTTTTAGGGGCAGATCCTTACTTGTCCG 532
||||||| || |||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 421 TAAGAGGTGCTGGTCGTGTGAAGATTTCGCGGTTTTTAGGGGCAGATCCTTATTTGTCCG 480
Query 533 GAGAGGTCAGACCAATACAGGATCGTATGAATTATGAGAGCAGCAATGAATTAACCTCAA 592
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 481 GAGAGGTCAGACCAATACAGGATCGTGTGAATTATGAGAGCAGCAATGAATTAACCTCAA 540
Query 593 AAATCTCCCAGCTGAAGGAATCTATTAAAAATCTTAACAGCTTGGAGATCAAACTTAAGG 652
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 541 AAATCTCCCAGCTGAAGGAATCTATTAAGAATCTTAACAGCTTGGAGATCAAACTTAAGG 600
Query 653 CTCCAGCAGACTCGCCGCTACAAACTCGTCTCATTAACTCTCTAAACTGGGCTGAAGATG 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CTCCAGCAGACTCGCCGCTACAAACTCGTCTCATTAACTCTCTAAACTGGGCTGAAGATG 660
Query 713 AGCCGCCGGTCGACTTTGACGAATCATTCGTACCTTCTCTCCAAGAACGTCTATCATTTT 772
|||||||||| || ||||||||||||||| ||||||| ||||||||||||||||| ||||
Sbjct 661 AGCCGCCGGTTGAGTTTGACGAATCATTCTTACCTTCCCTCCAAGAACGTCTATCCTTTT 720
Query 773 CAGCATTTCAACCCATCTCTGGATCGACGAAGTCGGAACTATCAAGGTTACAACAAGAGA 832
| |||||||||||||| || |||||||| |||||||||||||||||||||||||||||||
Sbjct 721 CTGCATTTCAACCCATTTCCGGATCGACAAAGTCGGAACTATCAAGGTTACAACAAGAGA 780
Query 833 AAATAAAAGCAATGGATATGAAAGATACAATAGAGAGATTAGAACTCTCAATGGGACTCA 892
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 781 AATTAAAAGCAATGGATATGAAAGATACAATAGAGAGGTTAGAACTCTCAATGGGACTCA 840
Query 893 TAAAGGAGAACATCTCCTCAATTGCAGCCAAACTCGCTATCCAATCCTTGGATATTCGCT 952
||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 841 TAAAGGAGAACATTTCCTCAATTGCAGCCAAACTCGCCATCCAATCCTTGGACATTCGCT 900
Query 953 AACCACTAGACTATACAAT 971
|| | || ||||||||||
Sbjct 901 AATCGTTACACTATACAAT 919
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41553979530
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5