BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G35350.1 Length=2256 Score E Sequences producing significant alignments: (Bits) Value Ahg922690 jgi|Araly1|922690|scaffold_103971.1 344 2e-93 > Ahg922690 jgi|Araly1|922690|scaffold_103971.1 Length=482 Score = 344 bits (186), Expect = 2e-93 Identities = 222/239 (93%), Gaps = 4/239 (2%) Strand=Plus/Plus Query 1211 TGATCATGTATGCTTCAAACATATACTTTTGGAAGCG---G-TATCGAGTGAATTACCCG 1266 ||||||||||||||||||||||||||||||||||| | | |||||||||||||||||| Sbjct 12 TGATCATGTATGCTTCAAACATATACTTTTGGAAGTGATCGATATCGAGTGAATTACCCG 71 Query 1267 TTTATATTCGGATTCAAAGAAGGAACAGAACTTGGTTATGGACATGTTCTGCTTCTAAGC 1326 || ||||| | |||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 72 TTCATATTTGAATTCAAAGAAGGAACAGAGCTTGGTTACGGACATGTTCTGCTTCTAAGC 131 Query 1327 TTTGGCCTTGGCACGCTTGCTCTCTGCGCTGTTCTAGTTAACATGGACATGGAGATGGAT 1386 |||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||| Sbjct 132 TTTGGCCTCGGCACGCTTGCTCTCTGCGCTGTTCTAGTTAACCTGGATATGGAGATGGAT 191 Query 1387 CCTAATACTAATGATTACAAGACCATCACTGAACTTGTTCCCCTTTTTGTTGTCGCGCT 1445 |||||||||||||| |||||||||||||||||||||||||||||||||| | | ||||| Sbjct 192 CCTAATACTAATGACTACAAGACCATCACTGAACTTGTTCCCCTTTTTGGTATAGCGCT 250 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 84941246350 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5