BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G35350.1

Length=2256
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg922690 jgi|Araly1|922690|scaffold_103971.1                        344    2e-93


> Ahg922690 jgi|Araly1|922690|scaffold_103971.1
Length=482

 Score =  344 bits (186),  Expect = 2e-93
 Identities = 222/239 (93%), Gaps = 4/239 (2%)
 Strand=Plus/Plus

Query  1211  TGATCATGTATGCTTCAAACATATACTTTTGGAAGCG---G-TATCGAGTGAATTACCCG  1266
             ||||||||||||||||||||||||||||||||||| |   | ||||||||||||||||||
Sbjct  12    TGATCATGTATGCTTCAAACATATACTTTTGGAAGTGATCGATATCGAGTGAATTACCCG  71

Query  1267  TTTATATTCGGATTCAAAGAAGGAACAGAACTTGGTTATGGACATGTTCTGCTTCTAAGC  1326
             || ||||| | |||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct  72    TTCATATTTGAATTCAAAGAAGGAACAGAGCTTGGTTACGGACATGTTCTGCTTCTAAGC  131

Query  1327  TTTGGCCTTGGCACGCTTGCTCTCTGCGCTGTTCTAGTTAACATGGACATGGAGATGGAT  1386
             |||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct  132   TTTGGCCTCGGCACGCTTGCTCTCTGCGCTGTTCTAGTTAACCTGGATATGGAGATGGAT  191

Query  1387  CCTAATACTAATGATTACAAGACCATCACTGAACTTGTTCCCCTTTTTGTTGTCGCGCT  1445
             |||||||||||||| |||||||||||||||||||||||||||||||||| | | |||||
Sbjct  192   CCTAATACTAATGACTACAAGACCATCACTGAACTTGTTCCCCTTTTTGGTATAGCGCT  250



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 84941246350


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5