BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G35365.1 Length=540 Score E Sequences producing significant alignments: (Bits) Value Ahg913393 jgi|Araly1|913393|Al_scaffold_0001_3647 427 4e-119 Ahg922694 jgi|Araly1|922694|scaffold_103975.1 300 8e-81 Ahg314017 jgi|Araly1|314017|fgenesh1_pm.C_scaffold_1002797 152 2e-36 Ahg913415 jgi|Araly1|913415|Al_scaffold_0001_3669 148 3e-35 Ahg922684 jgi|Araly1|922684|scaffold_103965.1 113 1e-24 > Ahg913393 jgi|Araly1|913393|Al_scaffold_0001_3647 Length=582 Score = 427 bits (231), Expect = 4e-119 Identities = 333/382 (87%), Gaps = 7/382 (2%) Strand=Plus/Plus Query 1 ATGGAATCAATGTCAACGACTGACCGCGTTGTCCGTA-ACAACAAGAGATTACCACAGTC 59 |||||||||||||||| ||| |||| |||||||| | || ||||||||||||||||||| Sbjct 1 ATGGAATCAATGTCAATTACTCACCGTGTTGTCCG-ACACGACAAGAGATTACCACAGTC 59 Query 60 TAGATATTCTCCTTACATTTTAAGGTCAGA-ACTATCTACTATTCATAACAGTAAAAAGA 118 |||||||||||||||||||||| |||||| || | ||||||||| | ||| |||| ||| Sbjct 60 TAGATATTCTCCTTACATTTTAGGGTCAGTGACCA-CTACTATTCCTTACACTAAAGAGA 118 Query 119 CTAATCTTACCATTGAGAAGCAGAAAGAGGAGGCTATACGACTCGGAGTTGAGCTCTCAC 178 || ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| | Sbjct 119 CTGATCTTACCATTGAGAGGCAGAAAGATGAGGCTATACGACTCGGAGTTGAGCTCTCGC 178 Query 179 TCTTTATGGCTGAAGCAATGTTCATATTATCTGATGACCTACGTTCTATGTTACTCCTCT 238 ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||| Sbjct 179 TCTTTGTGGCTGAAGCAATGTTCATATTATCCGATGACCTACGTTCTATGTTACTCTTCT 238 Query 239 GTCCTTTGATAGTGAAGTATGCAGGTTTTAAATATACTAATGATGGTCCTGTGAGAGAAG 298 ||||||| ||||||||||||| || | ||| |||||||||| ||||| ||||||||| Sbjct 239 TTCCTTTGGTAGTGAAGTATGCCGGGTACAAAAATACTAATGACGGTCCCGTGAGAGAAA 298 Query 299 GCTCTTGTGGTGGCGTCGTGAAAC--CTT-CTGATTTTGAACACTATAACCAAGAGATGA 355 |||||| ||||| || || ||| | |||||||||||||||| ||||||||| ||| Sbjct 299 GCTCTTTTGGTGATGTAGTAAAATTACAGACTGATTTTGAACACTACAACCAAGAGCTGA 358 Query 356 AGAAGCTGGAGGAGATGTTGAG 377 ||||||| ||||||| ||||| Sbjct 359 AGAAGCTAGAGGAGACATTGAG 380 > Ahg922694 jgi|Araly1|922694|scaffold_103975.1 Length=841 Score = 300 bits (162), Expect = 8e-81 Identities = 216/242 (89%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 1 ATGGAATCAATGTCAACGACTGACCGCGTTGTCCGTAACAACAAGAGATTACCACAGTCT 60 |||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||| Sbjct 75 ATGGAATCAATGTCAATGACTCACCATGTTGTCCGTAACAACAAGAGATTACCACAGTCT 134 Query 61 AGATATTCTCCTTACATTTTAAGGTCAGA-ACTATCTACTATTCATAACAGTAAAAAGAC 119 ||||||||||||||||||||| |||||| | | ||||||||| ||||| |||| |||| Sbjct 135 AGATATTCTCCTTACATTTTAGGGTCAGTGA-TCGCTACTATTCCTAACACTAAAGAGAC 193 Query 120 TAATCTTACCATTGAGAAGCAGAAAGAGGAGGCT-ATACGACTCGGAGTTGAGCTCTCAC 178 ||||||||||| |||||| |||||||| |||||| | |||||||||||||||||||| Sbjct 194 TAATCTTACCAATGAGAAACAGAAAGATGAGGCTGAG-CGACTCGGAGTTGAGCTCTCGG 252 Query 179 TCTTTATGGCTGAAGCAATGTTCATATTATCTGATGACCTACGTTCTATGTTACTCCTCT 238 | ||| ||||||||||||||||| |||||||||||||||||||||||||||||| | ||| Sbjct 253 TATTTGTGGCTGAAGCAATGTTCTTATTATCTGATGACCTACGTTCTATGTTACACTTCT 312 Query 239 GT 240 || Sbjct 313 GT 314 Score = 150 bits (81), Expect = 8e-36 Identities = 141/169 (83%), Gaps = 7/169 (4%) Strand=Plus/Plus Query 374 TGAGGGATGAGATAAAGTCTAACATTCTTCATTTGTGGAAGTCTCTCTTTGAAACACCAA 433 |||| || | ||| |||||||||||||||||||||||||||||||| |||| |||| | | Sbjct 658 TGAGAGAAGCGATGAAGTCTAACATTCTTCATTTGTGGAAGTCTCTATTTGTAACA-CTA 716 Query 434 TCAAGTTGATATACCCTGA-GGTTAGAATGCTTGAGATGTTCAAGCCTCTGTTGAACCAA 492 | ||||||| |||| | ||||||||| | ||| ||||| | |||||| ||||||||| Sbjct 717 -C-CCTTGATATTCCCT-AGGGTTAGAATTCATGATATGTTTAGGCCTCTCTTGAACCAA 773 Query 493 TCAAGGGA-GAGTATTTGCTCTCGTCTTATTGCATCTTTAGACATATGA 540 ||||| | || | ||||||||||||||||||| |||||| |||||||| Sbjct 774 GCAAGGCAGGA-TGTTTGCTCTCGTCTTATTGCTTCTTTACACATATGA 821 > Ahg314017 jgi|Araly1|314017|fgenesh1_pm.C_scaffold_1002797 Length=414 Score = 152 bits (82), Expect = 2e-36 Identities = 90/94 (96%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 133 GAGAAGCAGAAAGAGGAGGCTATACGACTCGGAGTTGAGCTCTCACTCTTTATGGCTGAA 192 |||||||||||||| ||| ||||||||||||||||||||||||| |||||| |||||||| Sbjct 79 GAGAAGCAGAAAGAAGAGACTATACGACTCGGAGTTGAGCTCTCGCTCTTTGTGGCTGAA 138 Query 193 GCAATGTTCATATTATCTGATGACCTACGTTCTA 226 |||||||||||||||||||||||||||||||||| Sbjct 139 GCAATGTTCATATTATCTGATGACCTACGTTCTA 172 Score = 87.9 bits (47), Expect = 7e-17 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 1 ATGGAATCAATGTCAACGACTGACCGCGTTGTCCGTAACAACAAGAGATTACCACA 56 |||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||| Sbjct 1 ATGGAATCGATGTCAATGACTGACCGTGTTGTCCGTAACAACAAGAGATTACCACA 56 > Ahg913415 jgi|Araly1|913415|Al_scaffold_0001_3669 Length=417 Score = 148 bits (80), Expect = 3e-35 Identities = 90/95 (95%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 133 GAGAAGCAGAAAGAGGAGGCTATACGACTCGGAGTTGAGCTCTCACTCTTTATGGCTGAA 192 |||||||||||||| ||||||||||||||||||||||||||||| |||||| |||| ||| Sbjct 82 GAGAAGCAGAAAGAAGAGGCTATACGACTCGGAGTTGAGCTCTCGCTCTTTGTGGCAGAA 141 Query 193 GCAATGTTCATATTATCTGATGACCTACGTTCTAT 227 ||||||||| ||||||||||||||||||||||||| Sbjct 142 GCAATGTTCCTATTATCTGATGACCTACGTTCTAT 176 > Ahg922684 jgi|Araly1|922684|scaffold_103965.1 Length=808 Score = 113 bits (61), Expect = 1e-24 Identities = 134/169 (79%), Gaps = 6/169 (4%) Strand=Plus/Plus Query 375 GAGGGATGAGATAAAGTCTAACATTCTTCATTTGTGG--AAGTCTCTCTTTGAAACACCA 432 ||| |||| |||||||||||||||||||||||||||| ||| || | |||| Sbjct 623 GAGAGATGCGATAAAGTCTAACATTCTTCATTTGTGGGCAAGGAAGTCACC-AGT-ACCA 680 Query 433 ATCAAGTTGATATACCCTGAGGTTAGAAT-GCTTGAGATGTTCAAGCCTCTGTTGAACCA 491 |||| | ||| || || | ||||||| ||| |||||||| | |||||| |||||||| Sbjct 681 CTCAAAATAATAAACGCTCCGATTAGAATTGCT-GAGATGTTTAGGCCTCTCTTGAACCA 739 Query 492 ATCAAGGGAGAGTATTTGCTCTCGTCTTATTGCATCTTTAGACATATGA 540 | |||||| | ||||||||||| |||||||||| |||||| |||||||| Sbjct 740 AGCAAGGGTGCGTATTTGCTCTTGTCTTATTGCTTCTTTACACATATGA 788 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19688283924 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5