BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G35365.1
Length=540
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913393 jgi|Araly1|913393|Al_scaffold_0001_3647 427 4e-119
Ahg922694 jgi|Araly1|922694|scaffold_103975.1 300 8e-81
Ahg314017 jgi|Araly1|314017|fgenesh1_pm.C_scaffold_1002797 152 2e-36
Ahg913415 jgi|Araly1|913415|Al_scaffold_0001_3669 148 3e-35
Ahg922684 jgi|Araly1|922684|scaffold_103965.1 113 1e-24
> Ahg913393 jgi|Araly1|913393|Al_scaffold_0001_3647
Length=582
Score = 427 bits (231), Expect = 4e-119
Identities = 333/382 (87%), Gaps = 7/382 (2%)
Strand=Plus/Plus
Query 1 ATGGAATCAATGTCAACGACTGACCGCGTTGTCCGTA-ACAACAAGAGATTACCACAGTC 59
|||||||||||||||| ||| |||| |||||||| | || |||||||||||||||||||
Sbjct 1 ATGGAATCAATGTCAATTACTCACCGTGTTGTCCG-ACACGACAAGAGATTACCACAGTC 59
Query 60 TAGATATTCTCCTTACATTTTAAGGTCAGA-ACTATCTACTATTCATAACAGTAAAAAGA 118
|||||||||||||||||||||| |||||| || | ||||||||| | ||| |||| |||
Sbjct 60 TAGATATTCTCCTTACATTTTAGGGTCAGTGACCA-CTACTATTCCTTACACTAAAGAGA 118
Query 119 CTAATCTTACCATTGAGAAGCAGAAAGAGGAGGCTATACGACTCGGAGTTGAGCTCTCAC 178
|| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
Sbjct 119 CTGATCTTACCATTGAGAGGCAGAAAGATGAGGCTATACGACTCGGAGTTGAGCTCTCGC 178
Query 179 TCTTTATGGCTGAAGCAATGTTCATATTATCTGATGACCTACGTTCTATGTTACTCCTCT 238
||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 179 TCTTTGTGGCTGAAGCAATGTTCATATTATCCGATGACCTACGTTCTATGTTACTCTTCT 238
Query 239 GTCCTTTGATAGTGAAGTATGCAGGTTTTAAATATACTAATGATGGTCCTGTGAGAGAAG 298
||||||| ||||||||||||| || | ||| |||||||||| ||||| |||||||||
Sbjct 239 TTCCTTTGGTAGTGAAGTATGCCGGGTACAAAAATACTAATGACGGTCCCGTGAGAGAAA 298
Query 299 GCTCTTGTGGTGGCGTCGTGAAAC--CTT-CTGATTTTGAACACTATAACCAAGAGATGA 355
|||||| ||||| || || ||| | |||||||||||||||| ||||||||| |||
Sbjct 299 GCTCTTTTGGTGATGTAGTAAAATTACAGACTGATTTTGAACACTACAACCAAGAGCTGA 358
Query 356 AGAAGCTGGAGGAGATGTTGAG 377
||||||| ||||||| |||||
Sbjct 359 AGAAGCTAGAGGAGACATTGAG 380
> Ahg922694 jgi|Araly1|922694|scaffold_103975.1
Length=841
Score = 300 bits (162), Expect = 8e-81
Identities = 216/242 (89%), Gaps = 4/242 (2%)
Strand=Plus/Plus
Query 1 ATGGAATCAATGTCAACGACTGACCGCGTTGTCCGTAACAACAAGAGATTACCACAGTCT 60
|||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||
Sbjct 75 ATGGAATCAATGTCAATGACTCACCATGTTGTCCGTAACAACAAGAGATTACCACAGTCT 134
Query 61 AGATATTCTCCTTACATTTTAAGGTCAGA-ACTATCTACTATTCATAACAGTAAAAAGAC 119
||||||||||||||||||||| |||||| | | ||||||||| ||||| |||| ||||
Sbjct 135 AGATATTCTCCTTACATTTTAGGGTCAGTGA-TCGCTACTATTCCTAACACTAAAGAGAC 193
Query 120 TAATCTTACCATTGAGAAGCAGAAAGAGGAGGCT-ATACGACTCGGAGTTGAGCTCTCAC 178
||||||||||| |||||| |||||||| |||||| | ||||||||||||||||||||
Sbjct 194 TAATCTTACCAATGAGAAACAGAAAGATGAGGCTGAG-CGACTCGGAGTTGAGCTCTCGG 252
Query 179 TCTTTATGGCTGAAGCAATGTTCATATTATCTGATGACCTACGTTCTATGTTACTCCTCT 238
| ||| ||||||||||||||||| |||||||||||||||||||||||||||||| | |||
Sbjct 253 TATTTGTGGCTGAAGCAATGTTCTTATTATCTGATGACCTACGTTCTATGTTACACTTCT 312
Query 239 GT 240
||
Sbjct 313 GT 314
Score = 150 bits (81), Expect = 8e-36
Identities = 141/169 (83%), Gaps = 7/169 (4%)
Strand=Plus/Plus
Query 374 TGAGGGATGAGATAAAGTCTAACATTCTTCATTTGTGGAAGTCTCTCTTTGAAACACCAA 433
|||| || | ||| |||||||||||||||||||||||||||||||| |||| |||| | |
Sbjct 658 TGAGAGAAGCGATGAAGTCTAACATTCTTCATTTGTGGAAGTCTCTATTTGTAACA-CTA 716
Query 434 TCAAGTTGATATACCCTGA-GGTTAGAATGCTTGAGATGTTCAAGCCTCTGTTGAACCAA 492
| ||||||| |||| | ||||||||| | ||| ||||| | |||||| |||||||||
Sbjct 717 -C-CCTTGATATTCCCT-AGGGTTAGAATTCATGATATGTTTAGGCCTCTCTTGAACCAA 773
Query 493 TCAAGGGA-GAGTATTTGCTCTCGTCTTATTGCATCTTTAGACATATGA 540
||||| | || | ||||||||||||||||||| |||||| ||||||||
Sbjct 774 GCAAGGCAGGA-TGTTTGCTCTCGTCTTATTGCTTCTTTACACATATGA 821
> Ahg314017 jgi|Araly1|314017|fgenesh1_pm.C_scaffold_1002797
Length=414
Score = 152 bits (82), Expect = 2e-36
Identities = 90/94 (96%), Gaps = 0/94 (0%)
Strand=Plus/Plus
Query 133 GAGAAGCAGAAAGAGGAGGCTATACGACTCGGAGTTGAGCTCTCACTCTTTATGGCTGAA 192
|||||||||||||| ||| ||||||||||||||||||||||||| |||||| ||||||||
Sbjct 79 GAGAAGCAGAAAGAAGAGACTATACGACTCGGAGTTGAGCTCTCGCTCTTTGTGGCTGAA 138
Query 193 GCAATGTTCATATTATCTGATGACCTACGTTCTA 226
||||||||||||||||||||||||||||||||||
Sbjct 139 GCAATGTTCATATTATCTGATGACCTACGTTCTA 172
Score = 87.9 bits (47), Expect = 7e-17
Identities = 53/56 (95%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 1 ATGGAATCAATGTCAACGACTGACCGCGTTGTCCGTAACAACAAGAGATTACCACA 56
|||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGGAATCGATGTCAATGACTGACCGTGTTGTCCGTAACAACAAGAGATTACCACA 56
> Ahg913415 jgi|Araly1|913415|Al_scaffold_0001_3669
Length=417
Score = 148 bits (80), Expect = 3e-35
Identities = 90/95 (95%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 133 GAGAAGCAGAAAGAGGAGGCTATACGACTCGGAGTTGAGCTCTCACTCTTTATGGCTGAA 192
|||||||||||||| ||||||||||||||||||||||||||||| |||||| |||| |||
Sbjct 82 GAGAAGCAGAAAGAAGAGGCTATACGACTCGGAGTTGAGCTCTCGCTCTTTGTGGCAGAA 141
Query 193 GCAATGTTCATATTATCTGATGACCTACGTTCTAT 227
||||||||| |||||||||||||||||||||||||
Sbjct 142 GCAATGTTCCTATTATCTGATGACCTACGTTCTAT 176
> Ahg922684 jgi|Araly1|922684|scaffold_103965.1
Length=808
Score = 113 bits (61), Expect = 1e-24
Identities = 134/169 (79%), Gaps = 6/169 (4%)
Strand=Plus/Plus
Query 375 GAGGGATGAGATAAAGTCTAACATTCTTCATTTGTGG--AAGTCTCTCTTTGAAACACCA 432
||| |||| |||||||||||||||||||||||||||| ||| || | ||||
Sbjct 623 GAGAGATGCGATAAAGTCTAACATTCTTCATTTGTGGGCAAGGAAGTCACC-AGT-ACCA 680
Query 433 ATCAAGTTGATATACCCTGAGGTTAGAAT-GCTTGAGATGTTCAAGCCTCTGTTGAACCA 491
|||| | ||| || || | ||||||| ||| |||||||| | |||||| ||||||||
Sbjct 681 CTCAAAATAATAAACGCTCCGATTAGAATTGCT-GAGATGTTTAGGCCTCTCTTGAACCA 739
Query 492 ATCAAGGGAGAGTATTTGCTCTCGTCTTATTGCATCTTTAGACATATGA 540
| |||||| | ||||||||||| |||||||||| |||||| ||||||||
Sbjct 740 AGCAAGGGTGCGTATTTGCTCTTGTCTTATTGCTTCTTTACACATATGA 788
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19688283924
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5