BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G35400.1

Length=621
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg913415 jgi|Araly1|913415|Al_scaffold_0001_3669                    363    1e-99
  Ahg314017 jgi|Araly1|314017|fgenesh1_pm.C_scaffold_1002797           335    3e-91
  Ahg913393 jgi|Araly1|913393|Al_scaffold_0001_3647                    113    1e-24


> Ahg913415 jgi|Araly1|913415|Al_scaffold_0001_3669
Length=417

 Score =  363 bits (196),  Expect = 1e-99
 Identities = 227/242 (94%), Gaps = 2/242 (1%)
 Strand=Plus/Plus

Query  234  TTTTGAATACTACAACCAAGAGATGAAGAAGCTAGAAGAGAAGTTGAGGTCTGCCAAGGA  293
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  177  TTTTGAATACTACAACCAAGAGATGAAGAAGCTAGAAGAGAAGTTGAGGTCTGCCAAGGA  236

Query  294  GTTTTCAGAGGCAAATGGGTTTGTGAGGGAAGAGATAAAGTCTAACATTCTTCACTTGTG  353
             ||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||
Sbjct  237  ATTTTCAGAGGCAAATGGGTTTGTGAGGGATGAGATCAAGTCTAACATTTTTCACTTGTG  296

Query  354  GAAGTCTCTCTTTGAAGCAACACCGGAAGTGATGAAACC-TAATAAGCTTATACTATTTG  412
            |||||||||||||||| |||||||||||||||| ||||| |||||||| |||||||||||
Sbjct  297  GAAGTCTCTCTTTGAAACAACACCGGAAGTGAT-AAACCCTAATAAGCCTATACTATTTG  355

Query  413  AGATGTTTATGCCTATCCAGGTCGAAGATCTCTGTCGTCATCTTGCTTCTTTACTCATAT  472
            || |||||| |||| ||| || |||||||||| |||||| ||||||||||||||||||||
Sbjct  356  AGCTGTTTAGGCCTGTCCGGGACGAAGATCTCCGTCGTCGTCTTGCTTCTTTACTCATAT  415

Query  473  GA  474
            ||
Sbjct  416  GA  417


> Ahg314017 jgi|Araly1|314017|fgenesh1_pm.C_scaffold_1002797
Length=414

 Score =  335 bits (181),  Expect = 3e-91
 Identities = 224/244 (92%), Gaps = 6/244 (2%)
 Strand=Plus/Plus

Query  234  TTTTGAATACTACAACCAAGAGATGAAGAAGCTAGAAGAGAAGTTGAGGTCTGCCAAGGA  293
            |||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||
Sbjct  174  TTTTGAATACTACATCCAAGAGCTTAAGAAGCTAGAAGAGAAGTTGAGGTCTGCCAAGGA  233

Query  294  GTTTTCAGAGGCAAATGGGTTTGTGAGGGAAGAGATAAAGTCTAACATTCTTCACTTGTG  353
             ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  234  ATTTTCAGAGGCCAATGGGTTTGTGAGGGAAGAGATAAAGTCTAACATTGTTCACTTGTG  293

Query  354  GAAGTCTCTCTTTGAAGCAACACCGGAAGTGATGAAACC-TAATAAGCTTATACTAT-TT  411
            ||||||||||||||||||||||||||||||||| ||||| |||||||| |||||| | ||
Sbjct  294  GAAGTCTCTCTTTGAAGCAACACCGGAAGTGAT-AAACCCTAATAAGCCTATACT-TCTT  351

Query  412  GAGATGTTTATGCCTATCCAGGTCGAAGATCT-CTGTCGTCATCTTGCTTCTTTACTCAT  470
            ||| |||||| ||||||| ||  ||||| | | |||||||| ||||||||||||||||||
Sbjct  352  GAGCTGTTTAGGCCTATCGAGAACGAAGTT-TGCTGTCGTCGTCTTGCTTCTTTACTCAT  410

Query  471  ATGA  474
            ||||
Sbjct  411  ATGA  414


 Score =  171 bits (92),  Expect = 8e-42
 Identities = 143/166 (86%), Gaps = 9/166 (5%)
 Strand=Plus/Plus

Query  1    ATGGAATCAATGTCTATGACTGACCGTATTGTCCGTAACAAC---A-A--A--A-GGACT  51
            |||||||| ||||| |||||||||||| ||||||||||||||   | |  |  |   |||
Sbjct  1    ATGGAATCGATGTCAATGACTGACCGTGTTGTCCGTAACAACAAGAGATTACCACAAACT  60

Query  52   AATCTCAACAAGGAAAAGGAGAATCAGAAAGAAGAGGCTATACGACCCGGAGTTAAGCTC  111
             ||||||||||||| |||||||| |||||||||||| ||||||||| ||||||| |||||
Sbjct  61   GATCTCAACAAGGAGAAGGAGAAGCAGAAAGAAGAGACTATACGACTCGGAGTTGAGCTC  120

Query  112  TCGCTCTTTGTGGCTGAAGCAATGTTCCTCTTATCTGATAACCTAC  157
            ||||||||||||||||||||||||||| | ||||||||| ||||||
Sbjct  121  TCGCTCTTTGTGGCTGAAGCAATGTTCATATTATCTGATGACCTAC  166


> Ahg913393 jgi|Araly1|913393|Al_scaffold_0001_3647
Length=582

 Score =  113 bits (61),  Expect = 1e-24
 Identities = 75/82 (91%), Gaps = 0/82 (0%)
 Strand=Plus/Plus

Query  76   CAGAAAGAAGAGGCTATACGACCCGGAGTTAAGCTCTCGCTCTTTGTGGCTGAAGCAATG  135
            |||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct  139  CAGAAAGATGAGGCTATACGACTCGGAGTTGAGCTCTCGCTCTTTGTGGCTGAAGCAATG  198

Query  136  TTCCTCTTATCTGATAACCTAC  157
            ||| | ||||| ||| ||||||
Sbjct  199  TTCATATTATCCGATGACCTAC  220



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22721258532


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5