BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G35410.1
Length=450
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314017 jgi|Araly1|314017|fgenesh1_pm.C_scaffold_1002797 370 5e-102
Ahg913415 jgi|Araly1|913415|Al_scaffold_0001_3669 309 1e-83
Ahg913393 jgi|Araly1|913393|Al_scaffold_0001_3647 113 9e-25
> Ahg314017 jgi|Araly1|314017|fgenesh1_pm.C_scaffold_1002797
Length=414
Score = 370 bits (200), Expect = 5e-102
Identities = 228/241 (95%), Gaps = 3/241 (1%)
Strand=Plus/Plus
Query 213 TTTTGAATACTACAACCAAGAGCTTAAGAAGCTAGAAGAGAAGTTGAGGTCTGCCAAGGA 272
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 TTTTGAATACTACATCCAAGAGCTTAAGAAGCTAGAAGAGAAGTTGAGGTCTGCCAAGGA 233
Query 273 ATTTTCAGAGGCAAATGGGTTTGTGAGGGAAGAGATAAAGTCTAACATTCTTCACTTGTG 332
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 234 ATTTTCAGAGGCCAATGGGTTTGTGAGGGAAGAGATAAAGTCTAACATTGTTCACTTGTG 293
Query 333 GAAGTCTCTCTTTGAAGCAACACCAGAAGTGAGAAACTCTAATAAGACTATAGTTCTTGA 392
|||||||||||||||||||||||| ||||||| |||| |||||||| ||||| |||||||
Sbjct 294 GAAGTCTCTCTTTGAAGCAACACCGGAAGTGATAAACCCTAATAAGCCTATACTTCTTGA 353
Query 393 GCTGTTTAGTCCTATCGATAACGAAGTTTGCTGTCGTC-T-T-GCTTCTTTACTCATATG 449
||||||||| |||||||| ||||||||||||||||||| | | |||||||||||||||||
Sbjct 354 GCTGTTTAGGCCTATCGAGAACGAAGTTTGCTGTCGTCGTCTTGCTTCTTTACTCATATG 413
Query 450 A 450
|
Sbjct 414 A 414
Score = 165 bits (89), Expect = 3e-40
Identities = 112/123 (91%), Gaps = 2/123 (2%)
Strand=Plus/Plus
Query 15 GAG-TTGCCAAAAGACTGATCTCAACAAGGAGAAGGAGAATCAGAAAGAAGAGGCTATAC 73
||| || ||| || |||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 45 GAGATTACCACAA-ACTGATCTCAACAAGGAGAAGGAGAAGCAGAAAGAAGAGACTATAC 103
Query 74 GACCCGGAGTTAAGCTCTCGCTCTTTGTGGCTGAAGCAATGTTCCTCTTATCTGATAACC 133
||| ||||||| |||||||||||||||||||||||||||||||| | ||||||||| |||
Sbjct 104 GACTCGGAGTTGAGCTCTCGCTCTTTGTGGCTGAAGCAATGTTCATATTATCTGATGACC 163
Query 134 TAC 136
|||
Sbjct 164 TAC 166
> Ahg913415 jgi|Araly1|913415|Al_scaffold_0001_3669
Length=417
Score = 309 bits (167), Expect = 1e-83
Identities = 219/243 (90%), Gaps = 7/243 (3%)
Strand=Plus/Plus
Query 213 TTTTGAATACTACAACCAAGAGCTTAAGAAGCTAGAAGAGAAGTTGAGGTCTGCCAAGGA 272
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 177 TTTTGAATACTACAACCAAGAGATGAAGAAGCTAGAAGAGAAGTTGAGGTCTGCCAAGGA 236
Query 273 ATTTTCAGAGGCAAATGGGTTTGTGAGGGAAGAGATAAAGTCTAACATTCTTCACTTGTG 332
|||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||
Sbjct 237 ATTTTCAGAGGCAAATGGGTTTGTGAGGGATGAGATCAAGTCTAACATTTTTCACTTGTG 296
Query 333 GAAGTCTCTCTTTGAAGCAACACCAGAAGTGAGAAACTCTAATAAGACTATAGT-TCTTG 391
|||||||||||||||| ||||||| ||||||| |||| |||||||| ||||| | | |||
Sbjct 297 GAAGTCTCTCTTTGAAACAACACCGGAAGTGATAAACCCTAATAAGCCTATACTAT-TTG 355
Query 392 AGCTGTTTAGTCCTATC-GATAACGAAGTT-TGC-T-GTCGTCTTGCTTCTTTACTCATA 447
|||||||||| ||| || | | ||||| | | | | |||||||||||||||||||||||
Sbjct 356 AGCTGTTTAGGCCTGTCCGGGA-CGAAGATCTCCGTCGTCGTCTTGCTTCTTTACTCATA 414
Query 448 TGA 450
|||
Sbjct 415 TGA 417
> Ahg913393 jgi|Araly1|913393|Al_scaffold_0001_3647
Length=582
Score = 113 bits (61), Expect = 9e-25
Identities = 75/82 (91%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 55 CAGAAAGAAGAGGCTATACGACCCGGAGTTAAGCTCTCGCTCTTTGTGGCTGAAGCAATG 114
|||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 139 CAGAAAGATGAGGCTATACGACTCGGAGTTGAGCTCTCGCTCTTTGTGGCTGAAGCAATG 198
Query 115 TTCCTCTTATCTGATAACCTAC 136
||| | ||||| ||| ||||||
Sbjct 199 TTCATATTATCCGATGACCTAC 220
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16254280914
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5