BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G35410.1 Length=450 Score E Sequences producing significant alignments: (Bits) Value Ahg314017 jgi|Araly1|314017|fgenesh1_pm.C_scaffold_1002797 370 5e-102 Ahg913415 jgi|Araly1|913415|Al_scaffold_0001_3669 309 1e-83 Ahg913393 jgi|Araly1|913393|Al_scaffold_0001_3647 113 9e-25 > Ahg314017 jgi|Araly1|314017|fgenesh1_pm.C_scaffold_1002797 Length=414 Score = 370 bits (200), Expect = 5e-102 Identities = 228/241 (95%), Gaps = 3/241 (1%) Strand=Plus/Plus Query 213 TTTTGAATACTACAACCAAGAGCTTAAGAAGCTAGAAGAGAAGTTGAGGTCTGCCAAGGA 272 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 174 TTTTGAATACTACATCCAAGAGCTTAAGAAGCTAGAAGAGAAGTTGAGGTCTGCCAAGGA 233 Query 273 ATTTTCAGAGGCAAATGGGTTTGTGAGGGAAGAGATAAAGTCTAACATTCTTCACTTGTG 332 |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 234 ATTTTCAGAGGCCAATGGGTTTGTGAGGGAAGAGATAAAGTCTAACATTGTTCACTTGTG 293 Query 333 GAAGTCTCTCTTTGAAGCAACACCAGAAGTGAGAAACTCTAATAAGACTATAGTTCTTGA 392 |||||||||||||||||||||||| ||||||| |||| |||||||| ||||| ||||||| Sbjct 294 GAAGTCTCTCTTTGAAGCAACACCGGAAGTGATAAACCCTAATAAGCCTATACTTCTTGA 353 Query 393 GCTGTTTAGTCCTATCGATAACGAAGTTTGCTGTCGTC-T-T-GCTTCTTTACTCATATG 449 ||||||||| |||||||| ||||||||||||||||||| | | ||||||||||||||||| Sbjct 354 GCTGTTTAGGCCTATCGAGAACGAAGTTTGCTGTCGTCGTCTTGCTTCTTTACTCATATG 413 Query 450 A 450 | Sbjct 414 A 414 Score = 165 bits (89), Expect = 3e-40 Identities = 112/123 (91%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 15 GAG-TTGCCAAAAGACTGATCTCAACAAGGAGAAGGAGAATCAGAAAGAAGAGGCTATAC 73 ||| || ||| || |||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 45 GAGATTACCACAA-ACTGATCTCAACAAGGAGAAGGAGAAGCAGAAAGAAGAGACTATAC 103 Query 74 GACCCGGAGTTAAGCTCTCGCTCTTTGTGGCTGAAGCAATGTTCCTCTTATCTGATAACC 133 ||| ||||||| |||||||||||||||||||||||||||||||| | ||||||||| ||| Sbjct 104 GACTCGGAGTTGAGCTCTCGCTCTTTGTGGCTGAAGCAATGTTCATATTATCTGATGACC 163 Query 134 TAC 136 ||| Sbjct 164 TAC 166 > Ahg913415 jgi|Araly1|913415|Al_scaffold_0001_3669 Length=417 Score = 309 bits (167), Expect = 1e-83 Identities = 219/243 (90%), Gaps = 7/243 (3%) Strand=Plus/Plus Query 213 TTTTGAATACTACAACCAAGAGCTTAAGAAGCTAGAAGAGAAGTTGAGGTCTGCCAAGGA 272 |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 177 TTTTGAATACTACAACCAAGAGATGAAGAAGCTAGAAGAGAAGTTGAGGTCTGCCAAGGA 236 Query 273 ATTTTCAGAGGCAAATGGGTTTGTGAGGGAAGAGATAAAGTCTAACATTCTTCACTTGTG 332 |||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||| Sbjct 237 ATTTTCAGAGGCAAATGGGTTTGTGAGGGATGAGATCAAGTCTAACATTTTTCACTTGTG 296 Query 333 GAAGTCTCTCTTTGAAGCAACACCAGAAGTGAGAAACTCTAATAAGACTATAGT-TCTTG 391 |||||||||||||||| ||||||| ||||||| |||| |||||||| ||||| | | ||| Sbjct 297 GAAGTCTCTCTTTGAAACAACACCGGAAGTGATAAACCCTAATAAGCCTATACTAT-TTG 355 Query 392 AGCTGTTTAGTCCTATC-GATAACGAAGTT-TGC-T-GTCGTCTTGCTTCTTTACTCATA 447 |||||||||| ||| || | | ||||| | | | | ||||||||||||||||||||||| Sbjct 356 AGCTGTTTAGGCCTGTCCGGGA-CGAAGATCTCCGTCGTCGTCTTGCTTCTTTACTCATA 414 Query 448 TGA 450 ||| Sbjct 415 TGA 417 > Ahg913393 jgi|Araly1|913393|Al_scaffold_0001_3647 Length=582 Score = 113 bits (61), Expect = 9e-25 Identities = 75/82 (91%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 55 CAGAAAGAAGAGGCTATACGACCCGGAGTTAAGCTCTCGCTCTTTGTGGCTGAAGCAATG 114 |||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||| Sbjct 139 CAGAAAGATGAGGCTATACGACTCGGAGTTGAGCTCTCGCTCTTTGTGGCTGAAGCAATG 198 Query 115 TTCCTCTTATCTGATAACCTAC 136 ||| | ||||| ||| |||||| Sbjct 199 TTCATATTATCCGATGACCTAC 220 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 16254280914 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5