BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G35420.2
Length=1251
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473673 jgi|Araly1|473673|fgenesh2_kg.1__3627__AT1G35420.1 1476 0.0
> Ahg473673 jgi|Araly1|473673|fgenesh2_kg.1__3627__AT1G35420.1
Length=1040
Score = 1476 bits (799), Expect = 0.0
Identities = 968/1047 (92%), Gaps = 22/1047 (2%)
Strand=Plus/Plus
Query 52 GGACCATATTGATTCTAGAAAGATACTTACAATGGCTGCATCGTTAGCCTCTCTTTCCTC 111
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 1 GGACCATATTGATTCTAGAAAGATACATACAATGGCTGCGTCGTTAGCCTCTCTTTCCTC 60
Query 112 CTTAGCTAAAGCCGGAGCACCACGGTCACTGTTCAACCGCCATGGCAGCCACCGCCTTCC 171
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 61 CTTAGCTAAAGCCGGAGCACCACGGTCACTATTCAACCGCCATGGCAGCCACCGCCTTCC 120
Query 172 TCCTCCACAAAT-CATACCTCTTGCTTCCTCTATCATGTTTTGTCAGATCAAGAAACATA 230
|||||| | ||| | | |||||||||| | | || | | ||||||||||||
Sbjct 121 TCCTCCGCGAATCCCT-CCTCTTGCTT-C-C--TC--------T--G-TCAAGAAACATA 164
Query 231 TCACGACGAGCTTCTATAGGAGAGGAAGTTCTCTGAAGAACATTTATGCCCTCGAGACCT 290
||||||| ||||||| ||| | ||| ||| |||||||||||| ||||||||||||||
Sbjct 165 TCACGACAAGCTTCTCGCGGACACAAAGGTCTATGAAGAACATTTCTGCCCTCGAGACCT 224
Query 291 CTGACGGCGCCATTAACGTGGAGG-T--CGATGATGATGAGGAAGAAGAAGCGTGTGAGC 347
|||||||| || |||||||||||| | ||||| ||||||||||||||||||||||||||
Sbjct 225 CTGACGGCACCGTTAACGTGGAGGTTGACGATGGTGATGAGGAAGAAGAAGCGTGTGAGC 284
Query 348 TTGTTAACGGAACAGAAGTGTCCGTTGACGGTGTTGAAGGTTATCTTTTAACGGCGGTGA 407
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
Sbjct 285 TTGTTAACGGAACAGAAGTGTCTGTTGATGGTGTTGAAGGTTATCTTTTAACGGCGGTAA 344
Query 408 AGAACAATAACGGAACTGGATTGCTTCTACTCTCTGATGTCTTTGGCTTTCAAGATTCAG 467
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 345 AGAACAATAACGGAACTGGATTGCTTCTTCTCTCTGATGTCTTTGGATTTCAAGATTCAG 404
Query 468 CTACACGCGATTTCGCTTACCGTGTGGCTTGCAATGGCTATAACGTTCTTGTCCCGGACT 527
| ||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct 405 CCACACGCGATTTCGCTTACCGTGTCGCTTGCAATGGCTACAATGTTCTTGTCCCGGACT 464
Query 528 TGTTTCGTGGAGATCCATGGTCGAAAAACCGACCAAAGTCCGAATACGAGGAATGGAGAA 587
| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 465 TATTTCGTGGAGATCCATGGTCGGAAAACCGACCAAAGTCCGAATTCGAGGAATGGAGAA 524
Query 588 GAGGACATGACCCTAACCGTATCAGACAAGACACTACTACCTTCACAAAATGGATGGTTG 647
||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 525 GAGGACACGACCCGAACCGTATCAGACAAGACACTACTAGCTTCACAAAATGGATGGTTG 584
Query 648 AGGAATTTGCAGCGGCTGGAATCTCCAAGAAGCTAGGAGTGATGGGGTTCTGTTTTGGCG 707
||||||||||||||||||| |||||||||||||||||||| |||||||||||||| || |
Sbjct 585 AGGAATTTGCAGCGGCTGGGATCTCCAAGAAGCTAGGAGTAATGGGGTTCTGTTTCGGTG 644
Query 708 GTGGACGTGTGGTTGACGTGTTAGCCACGGATGAGAGCGGTTACTTTAGCACCGGTGTCT 767
|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 645 GTGGACGTGTGGTTGACGTGTTAGCCACGGATGAGAATGGTTACTTCAGCACCGGTGTCT 704
Query 768 CGTTCTACGGTACGAGAATAGACTCGGCGGTGGCGGGAGATGTGAAAGTGCCAGTCTTGT 827
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 CGTTCTATGGTACGCGAATAGACTCGGCGGTGGCGGGAGATGTGAAAGTGCCAGTCTTGT 764
Query 828 TTATTGCTGGAGATAGAGACCCGCTTTGTGAAGTGAAGGGTTTGTATGAAATTGAGGAGA 887
||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 765 TTATTGCTGGAGACAGAGACCCGCTTTGTGAAGTGAAGGGTTTGTACGAAGTTGAGGAGA 824
Query 888 AGATTGGTGAA-GGTTCAAAGGTTGTTGTGTATGAAGGAAGAGGTCACGGCTTTGTTCAC 946
||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 825 AGATTGGTGAAAGGA-CAAAGGTTGTTGTGTATGAAGGAAGAGGTCACGGTTTTGTTCAC 883
Query 947 CGGCCCGAGACACCCGAAGATGATCGAGACGCTGAGGAAGCGTTTGCTCTCATGAGAAAT 1006
||||| |||||||| ||||||||| ||||||| ||||| ||||||||||| ||||| |||
Sbjct 884 CGGCCGGAGACACCGGAAGATGATAGAGACGCGGAGGAGGCGTTTGCTCTTATGAGGAAT 943
Query 1007 TGGTTACATCATCATTTGATTTGAAGCCAATTGTTTTTCTCTACTCTTTGTACATCCAAG 1066
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 944 TGGTTACATCATCATTTGATTTGAAACCAATTATTTTTCTCTACTCTTTGTACATCCAAG 1003
Query 1067 TTAAAATAAAACTCGGATTCTAGTAAA 1093
|||||||||||||||||||||||||||
Sbjct 1004 TTAAAATAAAACTCGGATTCTAGTAAA 1030
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46738696242
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5