BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G35430.1

Length=600
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg473674 jgi|Araly1|473674|fgenesh2_kg.1__3628__AT1G35430.1         564    3e-160


> Ahg473674 jgi|Araly1|473674|fgenesh2_kg.1__3628__AT1G35430.1
Length=506

 Score =  564 bits (305),  Expect = 3e-160
 Identities = 390/429 (91%), Gaps = 13/429 (3%)
 Strand=Plus/Plus

Query  78   CCATTTACTCCAGCCATGACTCTTCACGCGCCGTCGTCACCATTATGTTGACCGACGTCT  137
            ||||||| ||| ||||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct  43   CCATTTAATCCGGCCATGACTCTTCACGCGCCGTCGTCGTCATTATGTTGACCGACGTCT  102

Query  138  TTTGGCTTCGTACACGACGGAGCCGTTTCGTTTTCTTTCTCCTCTGTTCTCCATTACTAA  197
            ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct  103  TTTGGCTTCGTACACGACGGAGCCGCTTCATTTTCTTTCTCCTCTGTTCTCCATTACTAA  162

Query  198  TCCCAATCCTCTGTGCCTCAATCCCAATCCTCTGCGCCGTCGAGATCTTTAGTCGTCTCC  257
            |||||||| |||| ||||| |||||||| ||||||||||||||||||||||| || ||||
Sbjct  163  TCCCAATCATCTGCGCCTCCATCCCAATTCTCTGCGCCGTCGAGATCTTTAGCCGCCTCC  222

Query  258  GTAGTCGTCATCCTTGGTTTGCTAAATCCACCGCCGAGGAAGATGATTTGAGGCTCCGGA  317
            ||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||
Sbjct  223  GTAGTCGTCATCCTTGGTTTGCTAAATCCGCCGGCGATGAAGATGATTTGAGGCTCCGGA  282

Query  318  GATGTGAAGAAGGATGTGGTTGCGGCGGGTTTGATGAACCGGAAGAAG---CTGGTTTGC  374
             |||||||||||| |||||||||||||| |||||  | ||||||||||   |||| ||||
Sbjct  283  AATGTGAAGAAGGTTGTGGTTGCGGCGGATTTGA--A-CCGGAAGAAGAAGCTGGATTGC  339

Query  375  TTCAGAGATACTTGGAAGATCAGTTGGTTTTGGTTAGATCTGTTTATGATTGTGGTGAAG  434
            |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct  340  TTCAGAGATACTTGGAAGATCAGTTGATTTTGGTTAGATCTGTTTATGATTGCGGTGAAG  399

Query  435  AAGATCAAGATCAAGATCA--A----GATTCCGATCAAATTATTAGAGttcctcttcttt  488
            ||||||||||||  ||||   |    ||||||||||||||| |||| |||||||||||||
Sbjct  400  AAGATCAAGATCGTGATCGTGATCTTGATTCCGATCAAATTGTTAGGGTTCCTCTTCTTT  459

Query  489  cgtaaattt  497
            ||||| |||
Sbjct  460  CGTAA-TTT  467



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21977619264


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5