BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G35435.1
Length=249
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314020 jgi|Araly1|314020|fgenesh1_pm.C_scaffold_1002800 279 5e-75
> Ahg314020 jgi|Araly1|314020|fgenesh1_pm.C_scaffold_1002800
Length=255
Score = 279 bits (151), Expect = 5e-75
Identities = 218/250 (87%), Gaps = 6/250 (2%)
Strand=Plus/Plus
Query 1 ATGGCTTTGTCAAAGTTTCAACTAGTAGCTCTTCTAATCACATATACTCTCCTATTTTCT 60
|||| ||||||||| |||||||| | | | ||||| ||||||||| ||||||||||| ||
Sbjct 1 ATGGTTTTGTCAAAATTTCAACTTGCAACCCTTCTCATCACATATTCTCTCCTATTTACT 60
Query 61 TGCCAATCAAAAATAGTGAAAAGAATGCAAGTTGGACCTAG-CGAGTGTGTTTACAGAGG 119
|||||||||||| || |||||||||| ||| | |||||| | |||||||||||| |||||
Sbjct 61 TGCCAATCAAAAGTACTGAAAAGAATTCAAATCGGACCT-GACGAGTGTGTTTATAGAGG 119
Query 120 TCGGTGCCGAGAT-AGCTACGAATGTAGGAGTCGATGTGGACCGCCTGAGTTCTCACATG 178
|||||||||| | ||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 120 TCGGTGCCGA-TTCAGCTACGAATGTAGGAGTCGATGTGGACCGCCTGAGTTCCCAAATG 178
Query 179 AAACTCTTGGTTTATGCATGTTCGATTATGATGAT-TACGAATATTTTTGTTGTTGTACC 237
||| | |||||||||||||||| |||||| ||||| | |||||||||||||||||||||
Sbjct 179 AAATTATTGGTTTATGCATGTTTGATTATAATGATCTT-GAATATTTTTGTTGTTGTACC 237
Query 238 ACAAATTACT 247
|| || |||
Sbjct 238 TCATATAACT 247
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8630546986
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5