BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G35440.1
Length=744
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473675 jgi|Araly1|473675|fgenesh2_kg.1__3629__AT1G35440.1 989 0.0
> Ahg473675 jgi|Araly1|473675|fgenesh2_kg.1__3629__AT1G35440.1
Length=753
Score = 989 bits (535), Expect = 0.0
Identities = 667/731 (91%), Gaps = 7/731 (1%)
Strand=Plus/Plus
Query 1 ATGGCAGAAACAAAAAACTGGTATAACACAAGAGAAGCGATAGAAAAAACCTCTCCATCG 60
||||||||||| ||| |||||| |||||||||||| ||| ||||||| ||||||||||
Sbjct 1 ATGGCAGAAAC---AAAGTGGTATTACACAAGAGAAGAGATTGAAAAAATCTCTCCATCG 57
Query 61 AGACTTGACGGTATCAAC-TTAAAGGAAGAGACGTTCCAACGTTGGTCTTACACTTCATT 119
|||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||
Sbjct 58 AGACTTGACGGTATCAACTTTAAA-GAAGAGACTTTCCAACGTTGGTCTTACACTTCATT 116
Query 120 CCTACAAGAGCTTGGCCAGAGACTAAACAATCCTCAAAAAACTATAGCCAC-TGCGATTG 178
||| |||||||||||||||||||||||||||||||| ||| |||||||||| | ||||||
Sbjct 117 CCTTCAAGAGCTTGGCCAGAGACTAAACAATCCTCAGAAATCTATAGCCACAT-CGATTG 175
Query 179 TCTTGTGTCAACGATTCTTCACTCGTCAATCACTCACAAAGAACGACCCGAAAACAGTCG 238
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
Sbjct 176 TCTTGTGTCAACGATTCTTCACTCGTCAATCACTTGCAAAGAACGACCCAAAAACAGTAG 235
Query 239 CCATCATCTGTATGTTTATAGCCGGAAAAGTCGAAGGGTCTCCAAGGCCGGCCGGTGACG 298
||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||
Sbjct 236 CCATCATCTGTATGTTTATCGCTGGAAAAGTCGAAGGGTCTCCAAAGCCGGCCGGTGACG 295
Query 299 TCGTCTTTGTCTCGTACAGGGTTTTATTCAATAAGGAGCCGTTGAGAGACGTGTTCGAGA 358
|| || ||||||| ||| | |||||| |||||| |||||||||||||| |||||||||
Sbjct 296 TCATCGTTGTCTCTTACCGAGTTTTACACAATAAAGAGCCGTTGAGAGATGTGTTCGAGG 355
Query 359 GATTGAAGATGACTGTGTTAACCGGTGAGAAGCTTGTGCTCTCTACTTTAGAATGTGATC 418
||||||||| ||||||||||||||| |||||||||||||||||||| |||| || |||||
Sbjct 356 GATTGAAGAAGACTGTGTTAACCGGAGAGAAGCTTGTGCTCTCTACGTTAGGATTTGATC 415
Query 419 TTGAAATCGAACACCCTTATAAACTAGTGATGGATTGGGTTAAGAGATCGGTTAAGACCG 478
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 416 TCGAAATCGAACACCCTTATAAACTAGTGATGGATTGGGTTAAAAGATCGGTTAAGGCCG 475
Query 479 AGGATGGTAGGCGGTTATGTCAGGCTGCATTTAATTTCGTTAATGACAGTCTGAGGACGT 538
|||||| ||||||||||||||| ||||||||||||||| ||||||||||||| |||||||
Sbjct 476 AGGATGTTAGGCGGTTATGTCAAGCTGCATTTAATTTCATTAATGACAGTCTAAGGACGT 535
Query 539 CGCTTTGCTTGCAGTTTGGGCCTAGTCAGATCGCATCGGCTGCTATATATATCGGTTTGA 598
|||||||||| ||||| |||||||||||||| ||| | ||||||||||||||||||| |
Sbjct 536 CGCTTTGCTTACAGTTCGGGCCTAGTCAGATTGCAGCCGCTGCTATATATATCGGTTCGT 595
Query 599 GCATGTGTAAGATGACGTTACCGTGTGATGGAGATAAAGCGTGGTGGCGAGAGTTTGATG 658
|||||||||||||||||||||| |||||||||| |||| ||||||||||||||| ||||
Sbjct 596 TCATGTGTAAGATGACGTTACCGGGTGATGGAGAGAAAGTGTGGTGGCGAGAGTTCGATG 655
Query 659 TCACGAAACGTCAATTGTGGGAGATTTGTGACCAGATGCTTGATCTTTATGTTCAGGACT 718
||||||| |||||||||||||| ||||||||||||| |||| |||||||| |||||||||
Sbjct 656 TCACGAAGCGTCAATTGTGGGAAATTTGTGACCAGACGCTTAATCTTTATATTCAGGACT 715
Query 719 TCGTTGTTCCG 729
|||| |||||
Sbjct 716 TCGTCATTCCG 726
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27410377323
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5