BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G35460.1
Length=1151
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922711 jgi|Araly1|922711|scaffold_103992.1 1199 0.0
> Ahg922711 jgi|Araly1|922711|scaffold_103992.1
Length=812
Score = 1199 bits (649), Expect = 0.0
Identities = 774/830 (93%), Gaps = 26/830 (3%)
Strand=Plus/Plus
Query 156 CATTCTCCGGTGGAGACCCCGATGCAATCCACTCATATAAGCGGCGGAAGTA---GCGGT 212
|||||||||||| | | | ||||||||||||||||||| ||||||||||||| |||||
Sbjct 1 CATTCTCCGGTGAACAACTCGATGCAATCCACTCATATCAGCGGCGGAAGTAGCGGCGGT 60
Query 213 GGTGGTGGTGGAGGAGGAGGAGAGGTGAGTCGAAGTGGATTATCTCGGATCCGTTCAGCT 272
||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 GGTGGTGGTGGTGGCGGAGGAGAGGTGAGTCGAAGTGGTTTATCTCGGATCCGTTCAGCT 120
Query 273 CCAGCTACTTGGATTGAAACCCTACTCGAAGAAGATGAAGAAGAAGGTTTAAAACCTAAC 332
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 CCAGCTACTTGGATTGAAACCCTACTCGAAGAAGATGAAGAAGAAGGTTTAAAACCGAAC 180
Query 333 CTTTGTTTAACAGAGCTGCTTACTGGTAATAATAACTCTGGAGGAGTGATAACGAGTCGT 392
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 181 CTTTGTTTAACAGAGCTTCTTACTGG---TAATAACTCTGGAGGAGTGATAACGAGTC-- 235
Query 393 GACGACTCGTTCGAGTTCCTGAGTTCTGTTGAGCAAGGATTGTAT-A--ATCATCATCAA 449
|||| |||| || ||||||||||||||| ||||||||| | || |||| |||
Sbjct 236 -ACGA---GTTC-----CC-GAGTTCTGTTGAGCAGGGATTGTATAATTATAATCACCAA 285
Query 450 GGTGGTGGCTTTCACCGTCAGAATAGTTCTCCGGCTGATTTTCTTAGTGGGTCTGGT-TC 508
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 286 GGTGGTGGCTTTCACCGTCAGAATAGTTCTCCGGCGGATTTTCTTAGTGGGTCTGGTGT- 344
Query 509 TGGGACTGATGGGTATTTCTCTAA-TTTTGGTATTCCGGCGAATTATGACTATTTGTCGA 567
|||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||
Sbjct 345 TGGGACTGATGGGTTTTTCTC-AAGTTTTGGTATTCCGGCGAATTATGACTATTTGTCGA 403
Query 568 CCAACGTTGATATTTCTCCGACTAAACGGTCTAGAGATATGGAAACACAGTTTTCTTCTC 627
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 404 CCAACGTTGACATTTCTCCGACTAAACGGTCTAGAGATATGGAAACACAGTTTTCTTCTC 463
Query 628 AGCTGAAAGAAGAGCAAATGAGTGGTGGGATATCAGGAATGATGGATATGAACATGGACA 687
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
Sbjct 464 AGCTGAAAGAAGAGCAAATGAGTGGTGGGGTGTCAGGAATGATGGATATGAACATGGAAA 523
Query 688 AGATTTTTGAGGATTCAGTTCCTTGTAGGGTTCGTGCTAAACGTGGTTGTGCTACTCATC 747
||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 524 AGATTCTTGAAGATTCAGTTCCTTGTAGGGTTCGTGCTAAACGTGGTTGTGCAACTCATC 583
Query 748 CTCGTAGCATTGCTGAACGGGTGAGAAGAACGCGAATAAGTGATCGGATTAGGAGGCTGC 807
|||| ||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 584 CTCGCAGCATTGCTGAGCGGGTGAGAAGAACGAGAATAAGTGATCGGATCAGGAGGCTGC 643
Query 808 AAGAGCTTGTTCCTAACATGGATAAGCAAACCAACACTGCAGACATGTTGGAAGAAGCTG 867
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 644 AAGAACTTGTTCCTAACATGGATAAGCAAACCAACACTGCAGACATGTTGGAAGAAGCTG 703
Query 868 TGGAGTATGTGAAGGCTCTTCAAAGCCAGATCCAGGAATTGACAGAGCAGCAGAAGAGAT 927
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 704 TGGAGTACGTGAAGGCTCTTCAAAGCCAGATTCAGGAATTGACAGAGCAGCAGAAGAGAT 763
Query 928 GCAAATGCAAACCTAAAGAAGAACAATAATGTATCCTTTAGGATTTGATA 977
|||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 764 GCAAATGCAAACCTAAAGAAGAACAATAATGTTTCCTTTAGGATT-GATA 812
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42926404542
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5