BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G35467.1
Length=270
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943056 jgi|Araly1|943056|scaffold_603600.1 263 5e-70
> Ahg943056 jgi|Araly1|943056|scaffold_603600.1
Length=325
Score = 263 bits (142), Expect = 5e-70
Identities = 244/289 (84%), Gaps = 23/289 (8%)
Strand=Plus/Plus
Query 1 ATGTTGAAAGCACAAGTGTTTATGTTTGTGACAGTTTTGGTTTTTGTATGTGTGTTTATA 60
||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 21 ATGATGAAAGCACAAGTGTTTATGTTTGTGACAGTTTTGACTTTTGTATGTGTGTTTATA 80
Query 61 AATAGCAATGATGCGAAAAGGTATATTGA-ATATCCTCCA-TGGCAAAAACATCCT--TG 116
| ||||| |||||| | |||||||||| | |||||||||| || || ||||||||| ||
Sbjct 81 AGTAGCACTGATGCCATAAGGTATATT-ATATATCCTCCAGTG-CATAAACATCCTAATG 138
Query 117 TA----ATCCAAGATTTCCAACACCCG-ATTGTTATAAGCGTACACCAGCTAATCCATAT 171
| |||||||||||||||| |||| || |||||||||| ||||||| |||||||||
Sbjct 139 GATGTGATCCAAGATTTCCAACTCCCGCAT-GTTATAAGCGCACACCAGAGAATCCATAT 197
Query 172 AGACGAGGATGTACGTGTATCAGTAGATGCCGCCGTGA---TTGTGGAG------GATTA 222
|||||||||||| ||||||||| ||||||||||||||| ||||||| || ||
Sbjct 198 AGACGAGGATGTTCGTGTATCACTAGATGCCGCCGTGAGAATTGTGGACCAAACAGAGTA 257
Query 223 TCAACTTGGAAGAAACTTTTGGATACAA-TTTTGAAAATACCAGTGTAA 270
||| ||| ||| ||| ||||||||| || ||||| ||||||||||||||
Sbjct 258 TCATCTTTGAAAAAAATTTTGGATA-AAGTTTTGGAAATACCAGTGTAA 305
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9432500467
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5