BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G35470.2
Length=1696
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913410 jgi|Araly1|913410|Al_scaffold_0001_3664 1171 0.0
> Ahg913410 jgi|Araly1|913410|Al_scaffold_0001_3664
Length=1455
Score = 1171 bits (634), Expect = 0.0
Identities = 702/735 (96%), Gaps = 4/735 (1%)
Strand=Plus/Plus
Query 738 GGGATATGAAGCATCAGAGAGGAATAAGCAACAATTGGCTATTGAAAAAATATCCATACC 797
||||||||||||| |||||||||||||||||||| | |||| |||||| |||||| |||
Sbjct 723 GGGATATGAAGCAACAGAGAGGAATAAGCAACAAATAACTATCGAAAAACTATCCACACC 782
Query 798 TCCAAACATTGGTTATGGGCTTGTCAAGACCTACCTGCTACACTATGGGTATGAGGAGAC 857
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 783 TCCAAACATTGGTTATGGGCTTGTAAAGACCTACCTGCTACACTATGGGTATGAGGAGAC 842
Query 858 ACTCGATGCTTTCAACCTTGCTACTAAAAATACAGTTCCTCCAATTCATATAGATCAAGA 917
|||| |||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||
Sbjct 843 ACTCAATGCTTTCAACCTTGCTACTCAAACTACAGTTCCTCCAATCCATATAGATCAAGA 902
Query 918 AAATGCTATTGACGAGGATGATTCATCCTATGCTTTGAAACAGAGAAAGAATCTTAGACA 977
|||||||||||| ||||||||||| || ||||| |||||||||||||||||| |||||||
Sbjct 903 AAATGCTATTGATGAGGATGATTCCTCATATGCCTTGAAACAGAGAAAGAATTTTAGACA 962
Query 978 GCTTGTTAGGAATGGTGAGATTGATACTGCTTTGGCGGAACTCCAAAAGTTGTATCCCCA 1037
||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||
Sbjct 963 GCTTGTTAGGAATGGTGAGATTGATACTGCTCTGGCGGAACTCCGAAATTTGTATCCCCA 1022
Query 1038 AATTGTACAGGACGATAAATCTGTAGTTTGCTTCCTCCTTCACTGTCAAAAGTTTATTGA 1097
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1023 AATTGTACAGGATGATAAATCTGTAGTTTGCTTCCTCCTTCAATGTCAAAAGTTTATTGA 1082
Query 1098 ATTAGTACGGGTTGGAAAACTTGAAGAAGGTGTGAACTATGGCAGACTCGAGTTAGCTAA 1157
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1083 ATTAGTACGGGTTGGAAAACTTGAAGAAGGTGTGAAGTATGGCAGACTCGAGTTAGCTAA 1142
Query 1158 ATTTGTTGGGTTAACTGGATTTCAAGATATAGTCGAGGACTGCTTTGCTTTGCTCGCGTA 1217
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1143 ATTTGTTGGGTTAACTGGATTTCAAGATATAGTCGAGGACTGCTTTGCTTTACTCGTGTA 1202
Query 1218 TGAAAAGCCTGAGGAATCATCGGTCT-GGTATTTCCTAGAAGACTCACAGAGGGAATTAG 1276
|||||||||||||||||||||||| | ||||||||||||||||||| ||||||||| |||
Sbjct 1203 TGAAAAGCCTGAGGAATCATCGGT-TGGGTATTTCCTAGAAGACTCGCAGAGGGAACTAG 1261
Query 1277 TGGCTGATGCGGTGAATGCAGCAATACTATCAACAAATCCAAATAAGAAAGATGTGCAGA 1336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1262 TGGCTGATGCGGTGAATGCAGCAATACTATCAACAAATCCAAATAAGAAAGATGTGCAGA 1321
Query 1337 GAAGCTGTCACTTGCAATCCCATCTAGAGAAACTGCTAAGACAGTTAACCGTGTGCTGTT 1396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1322 GAAGCTGTCACTTGCAATCCCATCTAGAGAAACTGCTAAGACAGTTAACCGTGTGCTGTT 1381
Query 1397 TAGAAAGGCGGTCACTGAATGGAGACCAAGGTGAAACATTCCGGCTTCGAC-ATGTTCTT 1455
| |||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct 1382 TGGAAAGGCGGTCACTGAGTGGAGACCAAGGTGAAACATTCCGGCTTC-ACCATGTTCTT 1440
Query 1456 AACAACAACAGATAA 1470
|||||||||||||||
Sbjct 1441 AACAACAACAGATAA 1455
Score = 1083 bits (586), Expect = 0.0
Identities = 645/674 (96%), Gaps = 2/674 (0%)
Strand=Plus/Plus
Query 67 ATGAACTCTTCACCACCACCGGCGAATTCCGCCAACGGCGATACAACCAACAACGGCGAG 126
|||||||||||||| || ||||||||||||||||||||||||||||||||||||| || |
Sbjct 1 ATGAACTCTTCACCGCCGCCGGCGAATTCCGCCAACGGCGATACAACCAACAACGTCGTG 60
Query 127 AACGGTCAAGATCTGAACTTAAACTTCTTAGACAAGATTCGTCTCTCCGCTAAACGAGAT 186
||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||
Sbjct 61 AACGGTCAAGATCTGAACTTAAACTTCTTGGACAAGATTCGTCTCTCCGCGACACGAGAT 120
Query 187 GCGAAGGAAGACGAAGGAGAAGAATTACCGACGGAG-TTGAATACGATCAATAGCGCCGG 245
||||||||||||||||||||||| |||||||||||| || || |||||||||||||||||
Sbjct 121 GCGAAGGAAGACGAAGGAGAAGATTTACCGACGGAGCTT-AACACGATCAATAGCGCCGG 179
Query 246 CGGATTTCTTGTGGTTTCTCCTGATAAGCTTTCCGTGAAGTACACGAATACGAATCTACA 305
||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 180 CGGGTTTCTTGTGGTTTCTCCGGATAAGCTTTCCGTGAAGTACACTAATACGAATCTACA 239
Query 306 TGGTCACGATGTTGGTGTTGTTCAAGCTAATAAACCTGCTCCGATCAAGTGTCTTACTTA 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TGGTCACGATGTTGGTGTTGTTCAAGCTAATAAACCTGCTCCGATCAAGTGTCTTACTTA 299
Query 366 CTACTTTGAGATTTTTGTTAAAGATTCTGGTATTAAAGGACAAATTGCTATTGGTTTTAC 425
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 300 CTACTTTGAGATTTTTGTTAAAGATTCTGGGATTAAAGGTCAAATTGCTATTGGTTTTAC 359
Query 426 TAAGGAAAGCTTCAAAATGCGTAGACAACCTGGATGGGAAGTGAACAGCTGTGGATATCA 485
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 360 TAAGGAAAGCTTCAAAATGCGGAGACAACCTGGATGGGAAGTGAACAGCTGTGGCTATCA 419
Query 486 TGGGGATGATGGATACCTATATCGTGGACAGGGAAAAGGTGAACCTTTTGGTCCAAAGTT 545
|||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 420 TGGGGATGATGGATTCCTATATCGTGGACAGGGGAAAGGTGAACCTTTTGGTCCGAAGTA 479
Query 546 TACAAAAGATGATGCAGTTGGCGGTGGTATAAACTACGCTTCTCAGGAGTTCTTTTTCAC 605
||||||||||||| |||||||||||||||||||||| ||||| || ||||||||||||||
Sbjct 480 TACAAAAGATGATACAGTTGGCGGTGGTATAAACTATGCTTCGCAAGAGTTCTTTTTCAC 539
Query 606 TAAAAACGGAACTATTGTTGGGAAAATCCCCAAGGACATAAGAGGTCATCTATTCCCTAC 665
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 540 TAAAAACGGAGCTATTGTTGGGAAAATCCCTAAGGACATAAGAGGTCATCTATTCCCTAC 599
Query 666 TGTAGCTGTACATAGCCAAAATGAGGAGGTATTAGTCAATTTTGGGAAGAAGAAATTTGC 725
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 600 TGTAGCTGTACATAGCCAAAATGAGGAGGTATCAGTCAATTTTGGGAAGAAGAAATTTGC 659
Query 726 TTTCGATATTAAGG 739
||||||||||||||
Sbjct 660 TTTCGATATTAAGG 673
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63610709150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5