BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G35490.1
Length=1312
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473679 jgi|Araly1|473679|fgenesh2_kg.1__3633__AT1G35490.1 1770 0.0
> Ahg473679 jgi|Araly1|473679|fgenesh2_kg.1__3633__AT1G35490.1
Length=1329
Score = 1770 bits (958), Expect = 0.0
Identities = 1223/1340 (91%), Gaps = 62/1340 (5%)
Strand=Plus/Plus
Query 18 GGTGATCGAAACCAACCACACGGGAGGAGCTTATGCCATTTTCCTCCCCGTGGAAGGTCT 77
|||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1 GGTGATTGAAACCAACCACACGGGAGGAGATTATGCCATTTTCCTCCTCGTGGAAGGTCT 60
Query 78 AACAATCACACGTCTCCTAA--T-CTC-GTACGTCTTCTTAGGTTTTGAAGAATGGAAAA 133
|| ||||||||||||||||| | ||| | || |||| ||||||||||||||||||| |
Sbjct 61 AATAATCACACGTCTCCTAATTTGCTCAG-AC--CTTC-TAGGTTTTGAAGAATGGAAGA 116
Query 134 TTTAAGGAGGTTGTCAAACCCGGGAAATTTCGGATTCATTGGAAGATCACAATCACGAGT 193
||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 117 TTTAAACAGGTTGTCAAACCCGGGAAATTTCGGATTCATTGGAAG---ACAATCACGAAT 173
Query 194 TCCCCaaaaaaaCATGGAAAATAACATTTCTCCTCCTAATAATATGCACCACCATAGTGC 253
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 174 TCCCCAAAAAAACATGGAAAATAATATTTCTCCTCCTAATAATATGCACCACCATAGTGC 233
Query 254 TTCTTTAGATGATCTTTTCACAGAAGACCAACCAGCTTGGCTCGATGAGCTCCTAAGTGA 313
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 234 TTCTTTAGATGATCTTCTCACAGAAGACCAACCAGCTTGGCTAGATGAGCTCCTAAGTGA 293
Query 314 GCCAGCATCACCTAAGATTAACAAAGGTCATAGACGTTCAGCTAGTGACACAGCTGCTTA 373
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 GCCAGCTTCACCTAAGATTAACAAAGGTCATAGACGTTCAGCTAGTGACACAGCTGCTTA 353
Query 374 CTTGAACTCAGCTTTAATGCCTTC-------GA--AG-----G-AAAATCATGTTGCTGG 418
|||||||||||||||||||||||| || || | ||||||||||| ||||
Sbjct 354 CTTGAACTCAGCTTTAATGCCTTCAATGGAAGATCAGCTTATGAAAAATCATGTTTCTGG 413
Query 419 TTCGTCTTGGCAGTTCCAGAACTATGATTTGTGGCAGTCCAACTCTTATGAACAACACAA 478
||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 TTCTTTTTGGCAATTCCAGAACTATGATTTGTGGCAGTCCAACTCTTATGAACAACACAA 473
Query 479 TAAATTAGGATGGGATTTCTCTACAGCAAATGGAACTAATATCCAAAGAAATATGTCATG 538
|||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||
Sbjct 474 TAAATTAGGATGGGATTTGTCTACCGCAAATGGAACTAATCTCCAAAGAAATATGTCATG 533
Query 539 CGGAGCTTTAAAT--A-T--G----T---CGTCGAAACCCATTGAGAAACATGTAAGCAA 586
|||||| ||||| | | | | | |||||| ||||||||||||||||||||||
Sbjct 534 TGGAGCTGTAAATAGATTAGGTACCTCAACATCGAAATCCATTGAGAAACATGTAAGCAA 593
Query 587 AATGAAAGAAGGAACTTCTACAAAACCAGATGGTCCTAGATCAAAGACTGACTCAAAACG 646
|||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||
Sbjct 594 AATGAAAGAAGGAACTTCCACAAAACCAGATGGTCCTGGATCAAAGACTGACTCGAAACG 653
Query 647 TATCAAACATCAAAATGCTCATCGAGCGCGTTTGAGAAGGCTTGAGTACATATCAGACCT 706
|||||||||||||||||||||||| || ||| | ||||||||||||||||||||||||||
Sbjct 654 TATCAAACATCAAAATGCTCATCGGGCACGTCTAAGAAGGCTTGAGTACATATCAGACCT 713
Query 707 TGAAAGGACCATCCAAGTGCTACAAGTTGAAGGATGTGAAATGTCATCTGCCATTCACTA 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 TGAAAGGACCATCCAAGTGCTACAAGTTGAAGGATGTGAAATGTCATCTGCCATTCACTA 773
Query 767 CTTGGATCAGCAGTTACTCATGCTTAGCATGGAAAATAGAGCTTTAAAACAACGTATGGA 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 CTTGGATCAGCAGTTACTCATGCTTAGCATGGAAAATAGAGCTTTAAAACAACGTATGGA 833
Query 827 TAGTTTAGCAGAAATCCAAAAGCTTAAACATGTGGAGCAGCAATTGCTTGAGAGAGAGAT 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 TAGTTTAGCAGAAATCCAAAAGCTTAAACATGTGGAGCAGCAATTGCTTGAGAGAGAGAT 893
Query 887 AGGAAACCTACAGTTTCGACGacacca--a-caacaaccacagcaaaaccaaaaacaagt 943
|||||| |||||||||||| ||||||| | ||||||||||| || ||||||||||||||
Sbjct 894 AGGAAATCTACAGTTTCGAAGACACCACCAACAACAACCACAACAGAACCAAAAACAAGT 953
Query 944 ccaagcaatacaa-aa--tcgatacaacaaatatcaacCACCTGTTACACAAGAACCCGA 1000
|||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 954 GCAAGCAATACAACAAAATCGATACAACAAATATCAACCACCTGTTACACAAGAACCAGA 1013
Query 1001 -TGCCCAATTTGCAGCCTTGGCAATATGATTTAGGAAATATGGATACATTG---TTCAGA 1056
| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 1014 CT-CCCAATTTGCAGCCTTGGCAATATGATTTAGGAAATATGGATCCATTACAATTCAGA 1072
Query 1057 TTAAGCTGAGCTCCTCTTGCTCTACCTTAATGTCCATACAACATAGGTGAACT-T-GATG 1114
||| ||||||||| |||||||||| |||||||||||||||||||||||||||| | ||||
Sbjct 1073 TTATGCTGAGCTCTTCTTGCTCTATCTTAATGTCCATACAACATAGGTGAACTATTGATG 1132
Query 1115 TTTGTAGCCTTGAATGAAAACCTAAA-AAAGCATCGTTATGTAAATCAAAATGTGGTTGC 1173
|||||| |||||||||| ||||||| ||| || | ||||||| |||| |||||||||||
Sbjct 1133 TTTGTATTCTTGAATGAATACCTAAAGAAA-CACCATTATGTACATCACAATGTGGTTGC 1191
Query 1174 CCATATCCTCCTCTATTGCATTTCTCTCTATTTATGGCATGGTAGAGAATCTCTTGTCAA 1233
|||||||| |||||||||||||||||| |||||||| |||||||||||||| |||||||
Sbjct 1192 CCATATCCCCCTCTATTGCATTTCTCT--ATTTATGGGATGGTAGAGAATCTATTGTCAA 1249
Query 1234 GAAAC---TTC----ATGTTATGTAATAACTTGTAATCCTTCTTATTTCATCTATTATAT 1286
||||| ||| ||||||||| |||| ||||||| ||||||||||||||||||||||
Sbjct 1250 GAAACAACTTCTTTCATGTTATGTCATAATTTGTAATTCTTCTTATTTCATCTATTATAT 1309
Query 1287 ATATGAATAAGTAAtttttt 1306
|||||||||| |||||||||
Sbjct 1310 ATATGAATAAATAATTTTTT 1329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49064194179
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5