BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G35500.1 Length=417 Score E Sequences producing significant alignments: (Bits) Value Ahg927036 jgi|Araly1|927036|scaffold_202597.1 134 7e-31 > Ahg927036 jgi|Araly1|927036|scaffold_202597.1 Length=1273 Score = 134 bits (72), Expect = 7e-31 Identities = 154/192 (80%), Gaps = 12/192 (6%) Strand=Plus/Minus Query 61 GATCTCGGAA-ATCCGAA-AGCA-TGGGAGATAAGACTCACCAT-TTTAACCGATGAAGT 116 ||||| |||| |||| || || | |||| || | | |||||||| ||| | ||||||| Sbjct 274 GATCT-GGAAGATCC-AAGAG-AGTGGGTGAGAGGTCTCACCATCTTT-TCTGATGAAGC 219 Query 117 GCTATCAGAGAACCAG-AAGCTCGCCACCCAGAAGATAGATCCGTCGTGCGCCGTCGACG 175 | | | |||| || | | || ||||||||||||||||| || ||||||||||||||| Sbjct 218 ACAAGCGGAGAGCC-GTGTGATCTCCACCCAGAAGATAGATTCGCCGTGCGCCGTCGACG 160 Query 176 TCTCCATCGGACATGGCGCATCTGACAGTCCAAGAG-GGAGTTCTCTTGCCATTAATGAG 234 |||||||||||||||||||||||||| ||||||||| ||| |||||||||| || || Sbjct 159 TCTCCATCGGACATGGCGCATCTGACGGTCCAAGAGAGGAAA-CTCTTGCCATCAACGAA 101 Query 235 GTCCGATGTGAG 246 | ||| |||||| Sbjct 100 GCCCGGTGTGAG 89 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 14995146477 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5