BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G35500.1

Length=417
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg927036 jgi|Araly1|927036|scaffold_202597.1                        134    7e-31


> Ahg927036 jgi|Araly1|927036|scaffold_202597.1
Length=1273

 Score =  134 bits (72),  Expect = 7e-31
 Identities = 154/192 (80%), Gaps = 12/192 (6%)
 Strand=Plus/Minus

Query  61   GATCTCGGAA-ATCCGAA-AGCA-TGGGAGATAAGACTCACCAT-TTTAACCGATGAAGT  116
            ||||| |||| |||| || || | |||| || | | |||||||| |||  | ||||||| 
Sbjct  274  GATCT-GGAAGATCC-AAGAG-AGTGGGTGAGAGGTCTCACCATCTTT-TCTGATGAAGC  219

Query  117  GCTATCAGAGAACCAG-AAGCTCGCCACCCAGAAGATAGATCCGTCGTGCGCCGTCGACG  175
             | | | |||| || |   | || ||||||||||||||||| || |||||||||||||||
Sbjct  218  ACAAGCGGAGAGCC-GTGTGATCTCCACCCAGAAGATAGATTCGCCGTGCGCCGTCGACG  160

Query  176  TCTCCATCGGACATGGCGCATCTGACAGTCCAAGAG-GGAGTTCTCTTGCCATTAATGAG  234
            |||||||||||||||||||||||||| ||||||||| |||   |||||||||| || || 
Sbjct  159  TCTCCATCGGACATGGCGCATCTGACGGTCCAAGAGAGGAAA-CTCTTGCCATCAACGAA  101

Query  235  GTCCGATGTGAG  246
            | ||| ||||||
Sbjct  100  GCCCGGTGTGAG  89



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14995146477


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5