BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G35510.1
Length=2302
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473680 jgi|Araly1|473680|fgenesh2_kg.1__3634__AT1G35510.1 3217 0.0
> Ahg473680 jgi|Araly1|473680|fgenesh2_kg.1__3634__AT1G35510.1
Length=2218
Score = 3217 bits (1742), Expect = 0.0
Identities = 2013/2140 (94%), Gaps = 33/2140 (2%)
Strand=Plus/Plus
Query 42 tctctctcGCCATCACTGCTTTCTTCACGTGATTACGTTAA-TTTACTCGAAAAGACTC- 99
||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 20 TCTCTCTCGGCATTACTGCTTTCTTCACGTGATTACGTTAATTTTACTCGAAAAG-CTCA 78
Query 100 AAAAACTTTCCTTCTCTTTCTCTTTCATTTTCTCGGGAAAATTCTCCAACGAAGCttttt 159
||||||||| | |||||||||| |||||||| |||||||||||||| || | |||||
Sbjct 79 AAAAACTTT-C-TCTCTTTCTC--TCATTTTC-CGGGAAAATTCTCC-AC-CA--TTTTT 129
Query 160 tttGCTTCTTCTCTAAATTAAATTTTGGACTGAAGCAAAAAAGAAAATTAAATTCGTTCA 219
||| |||||||||||||||||||||| | || | ||||||| |||| |||||||||||
Sbjct 130 TTTCCTTCTTCTCTAAATTAAATTTT-G--TG-A-CAAAAAA-AAAAAAAAATTCGTTCA 183
Query 220 TACTCTACAACGAAGCTTACCACACAATGCTTCTTCTACTACCTTCTCTTTCCAAATCCA 279
||||||||||| ||||||||||||| ||||| || ||||||||||||||||||||||| |
Sbjct 184 TACTCTACAACAAAGCTTACCACACGATGCTACTACTACTACCTTCTCTTTCCAAATCAA 243
Query 280 TCTCCGTCTTGTTCTAGGGTTTATCC-CAATCGATTTCAGATCATGCACGGCCTTAGCCG 338
||||||| || |||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 244 TCTCCGTGTTTTTCTAGGGTTTA-CCTCAATCGATTTCAGATCATGCACGGCCTTAGCCG 302
Query 339 TCTAGGTAACGGCAGTAGCAACGGTAGAATCAATATTCCGTCACCGTCACCACCTTCTTC 398
|||||||||||||| |||||||||| |||||||| || | ||||| ||||| ||||||||
Sbjct 303 TCTAGGTAACGGCAATAGCAACGGTCGAATCAATCTTTCATCACCATCACCGCCTTCTTC 362
Query 399 GCCTCGGATTCGTCATACCAGAGGAAAATCTCTCGCC---GGAGGTGTTTATAAGCAAGG 455
||||||||||||||| | ||||||||||| |||||| ||||| ||||||||||| ||
Sbjct 363 GCCTCGGATTCGTCACAGTAGAGGAAAATCACTCGCCGGAGGAGGAGTTTATAAGCAGGG 422
Query 456 ATTAGGAGAGAGACTTGTGTTTTTACTCTTTTCGATAGTTTTTAGAAGGAAAGGTGTCTT 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 ATTAGGAGAGAGACTTGTGTTTTTACTCTTTTCGATAGTTTTTAGAAGGAAAGGTGTCTT 482
Query 516 GTTGTTAGCGCCGCTTCTCTATATCGCTGGAATGTTACTATTTATGGGATCTTTTGGATT 575
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 483 GTTGTTAGCGCCGCTTCTCTATATCGCTGGAATGTTACTGTTTATGGGATCTTTTGGATT 542
Query 576 CACTGTGTTGGATCTAGGTCATGGTGTTGAGATTGTGTATAGACGTGGTTCTCCTGGTTC 635
|||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||
Sbjct 543 CACTGTGTTGGATCTAGGTCATGGTGTTGAGATTGTTTATAGAGGTGGTCCTCCTGGTTC 602
Query 636 GGTATATCGGAGTCCTAAGGTTTTTAAACGGCTTTGGCCGGTGATGGAAGCTGATGTTAA 695
||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 603 GGTGTATCGGAGTCCTAAGGTTTTTAAACGGCTTTGGCCGTTGATGGAGGCTGATGTTAA 662
Query 696 TGGAAGTAGTCATAATGTGTTGATGGAAGCATGGAAGCCTAGAGTTAAAAGTGTATGGAA 755
||||| ||||||||||||||||||| ||| ||||||||| |||||||||||| |||||||
Sbjct 663 TGGAACTAGTCATAATGTGTTGATGCAAGTATGGAAGCCAAGAGTTAAAAGTATATGGAA 722
Query 756 GCCGTGTATTAGTACTAATGTTTCTGCTGCTGGATCGAATTCGAATGGTTATTTCATTAT 815
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 723 ACCGTGTATTAGTACTAATGTTTCTGCTGCGGGATCGAATTCGAATGGTTATTTTATTAT 782
Query 816 TGAAGCGAATGGTGGATTGAATCAACAACGCTTGTCAATATGTGATGCAGTTGCTGTGGC 875
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 TGAAGCGAATGGCGGATTGAATCAACAACGCTTGTCAATATGTGATGCAGTTGCTGTGGC 842
Query 876 TGGACTGCTGAATGCTACTCTTGTCATTCCGATTTTTCACTTAAACAGTGTATGGCGTGA 935
|||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 843 TGGATTGCTGAATGCTACTCTTGTCATCCCGATTTTTCACTTGAACAGTGTATGGCGTGA 902
Query 936 TTCCAGCAAATTTGGTGATATATTTGATGAAGACTTCTTCATATATGCTCTTAGTAAGAA 995
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 903 TTCCAGCAAATTTGGCGATATATTTGATGAGGACTTCTTCATATATGCTCTTAGTAAGAA 962
Query 996 TGTGAATGTTGTGAAAGAGCTCCCAAAAGATGTACTTGAGCGATATAACTACAATATAAG 1055
||||||||| ||||||||||||||||||||| |||||||||| || ||||||||||||||
Sbjct 963 TGTGAATGTAGTGAAAGAGCTCCCAAAAGATATACTTGAGCGGTACAACTACAATATAAG 1022
Query 1056 CAGTATTGTTAATTTGAGATTAAAAGCTTGGTCGAGTCCAGCGTACTATCTCCAGAAGGT 1115
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1023 CAGTATTGTTAATTTGAGATTAAAAGCTTGGTCGAGTCCAGCATACTACCTCCAGAAGGT 1082
Query 1116 GCTTCCACAACTTTTGCGTTTGGGGGCTGTCCGTGTTGCACCATTTTCCAATAGGTTAGC 1175
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct 1083 GCTTCCACAACTTTTGCGTTTGGGGGCTGTCCGTGTTGCACCATTCTCCAACAGGTTGGC 1142
Query 1176 TCATGCAGTTCCTGCACACATTCAAGGGCTCAGATGCTTAGCAAACTTTGAAGCATTGAG 1235
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1143 TCATGCAGTTCCCGCACACATTCAAGGACTCAGATGCTTAGCAAACTTTGAAGCATTGAG 1202
Query 1236 ATTTGCAGAACCCATACGGCTTCTTGCAGAGAAAATGGTCGATAGGATGGTTACAAAGAG 1295
||||||||| ||||||||||| |||||||| ||||||||| ||||||||||||| |||||
Sbjct 1203 ATTTGCAGATCCCATACGGCTGCTTGCAGATAAAATGGTCAATAGGATGGTTACGAAGAG 1262
Query 1296 TGTTGAGAGTGGAGGAAAATATGTTTCTGTTCATCTCCGCTTTGAAATGGACATGGTCGC 1355
|||| | || |||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1263 TGTTCAAAGCGGAGGAAAATATGTGTCTGTTCATCTCCGCTTTGAAATGGACATGGTTGC 1322
Query 1356 CTTTTCGTGTTGCGAGTATGATTTTGGGCAGGCGGAGAAGCTAGAAATGGACATGGCCCG 1415
||| ||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 1323 CTTCTCGTGTTGCGAATATGACTTTGGGAAGGCGGAGAAGCTAGAAATGGACATGGCCCG 1382
Query 1416 GGAAAGAGGGTGGAAAGGAAAGTTCAGGAGGAGAGGCAGAGTAATTAGGCCTGGTGCAAA 1475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1383 GGAAAGAGGGTGGAAAGGAAAGTTCAGGAGGAGAGGCAGAGTAATTAGGCCTGGTGCAAA 1442
Query 1476 CCGCATAGATGGGAAATGCCCTTTAACCCCACTGGAGGTCGGAATGATGCTTAGGGGCAT 1535
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1443 CCGCATAGATGGAAAATGCCCTTTAACCCCACTCGAGGTCGGAATGATGCTTAGGGGCAT 1502
Query 1536 GGGATTTAACAATAGCACCTTGGTTTACGTAGCTGCGGGAAACATTTACAAAGCTGACAA 1595
||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1503 GGGTTTTAACAATAGCACATTGGTTTACGTTGCTGCGGGAAACATTTACAAAGCTGACAA 1562
Query 1596 ATATATGGCTCCTCTAAGGCAGATGTTTCCTCTTCTCCAAACCAAGGATACTCTAGCTAC 1655
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1563 ATATATGGCTCCTCTTAGGCAGATGTTTCCTCTTCTCCAAACCAAGGATACTCTAGCTAC 1622
Query 1656 TCCAGAGGAGCTTGCTCCGTTTAAGGGACACTCATCAAGATTGGCAGCACTTGATTACAC 1715
||||||||||||||||||||| ||||| ||||||||||||||||| ||||| ||||||||
Sbjct 1623 TCCAGAGGAGCTTGCTCCGTTCAAGGGCCACTCATCAAGATTGGCTGCACTAGATTACAC 1682
Query 1716 AGTATGCCTCCACAGTGAAGTGTTTGTATCCACTCAAGGTGGAAACTTCCCACATTTCTT 1775
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1683 AGTATGCCTCCACAGTGAAGTGTTTGTATCCACTCAAGGTGGAAACTTCCCTCATTTCTT 1742
Query 1776 GATAGGTCACCGTCGCTACCTTTACAAAGGCCACGCTGAGACAATCAAACCCGATAAGCG 1835
||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1743 GATAGGTCATCGTCGTTACCTTTACAAAGGCCACGCGGAGACAATCAAACCCGATAAGCG 1802
Query 1836 GAAACTAGTCCAGCTCTTAGATAAACCGAGCATTAGATGGGACTACTTCAAGAAACAAAT 1895
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1803 GAAACTAGTCCAGCTCTTAGATAAACCAAGCATTAGATGGGACTACTTCAAGAAACAAAT 1862
Query 1896 GCAAGATATGCTTAGACACAATGATGCAAAGGGAGTCGAATTAAGGAAACCCGCTGCATC 1955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1863 GCAAGATATGCTTAGACACAATGATGCAAAGGGAGTCGAATTAAGGAAACCCGCTGCATC 1922
Query 1956 ACTCTACACGTTCCCCATGCCCGACTGCATGTGTAAAGAACCCGATCCGGAACCTGAAAC 2015
|||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||| ||||
Sbjct 1923 ACTCTACACGTTTCCCATGCCCGATTGCATGTGTAAAGAACCTGATCCTGAACCTCAAAC 1982
Query 2016 CGATCCAGCTTAAACCGGATTCCTGCTGTTCAGTGTTAATTA-TTGTTTATGACTTCAAC 2074
||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||
Sbjct 1983 CGATCCAGCTTAAACCGGATTCCTGCTGTTCAGTGTT--TTAATTGTTTATGACTCCAAC 2040
Query 2075 CATACATGTAACTTATCTATATATATGTTGTATCATGAGTCC-TGTATAAGCATTTTT-- 2131
|||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||
Sbjct 2041 CATACATGTAACTTATCTATATAT--GTTGTATCATGA-TCCATGTATAAGCATTTTTTG 2097
Query 2132 CCCCTTCAAAAGTTGGGGGAATCTAAGATTAGTAtttttt 2171
||||| |||||||| |||||||||||||||||||||||||
Sbjct 2098 CCCCT-CAAAAGTTTGGGGAATCTAAGATTAGTATTTTTT 2136
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86693397620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5