BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G35515.1
Length=639
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473681 jgi|Araly1|473681|fgenesh2_kg.1__3635__AT1G35515.1 760 0.0
Ahg489795 jgi|Araly1|489795|fgenesh2_kg.6__2929__AT4G09460.1 438 2e-122
> Ahg473681 jgi|Araly1|473681|fgenesh2_kg.1__3635__AT1G35515.1
Length=609
Score = 760 bits (411), Expect = 0.0
Identities = 547/611 (90%), Gaps = 15/611 (2%)
Strand=Plus/Plus
Query 1 ATGGGAAGATCACCATGTTGTGAAAAGGCTCACATGAACAAAGGAGCATGGACTAAAGAA 60
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGGAAGATCACCATGTTGTGAAAAAGCTCACACAAACAAAGGAGCATGGACTAAAGAA 60
Query 61 GAAGATCAACGTCTTATTGATTATATACGTAATCATGGTGAAGGCTCTTGGCGTTCTCTT 120
|||||||||| ||| |||||||| ||||||| | ||||||||||||||||||||||||||
Sbjct 61 GAAGATCAACTTCTGATTGATTACATACGTACTAATGGTGAAGGCTCTTGGCGTTCTCTT 120
Query 121 CCTAAATCCGTTGGGTTGTTGCGTTGTGGAAAAAGTTGTAGATTAAGATGGATTAATTAC 180
|||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 121 CCTAAATCCGCCGGGTTGTTGCGGTGTGGAAAAAGTTGTAGATTAAGGTGGATTAATTAT 180
Query 181 CTTCGTCCTGATCTTAAACGTGGAAATTTCACTGATGGTGAAGAGCAAATCATTGTCAAA 240
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 181 CTTCGTCCTGATCTTAAACGTGGAAATTTCACTGATGGTGAAGATCAAATCATTGTTAAA 240
Query 241 CTTCATAGTTTATTTGGCAACAAATGGTCTTTGATTGCTGGGAAATTACCGGGAAGAACC 300
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 241 CTTCATAGTTTATTCGGCAACAAATGGTCTTTGATAGCTGGGAAATTACCGGGAAGGACA 300
Query 301 GATAATGAGATTAAAAATTATTGGAACACTCATATAAAAAGGAAGCTTCTTAACCGTGGT 360
||||||||||||||||| |||||||||||||||||||| | |||||||||| || |||
Sbjct 301 GATAATGAGATTAAAAACTATTGGAACACTCATATAAAGCGAAAGCTTCTTAGCCATGGC 360
Query 361 ATTGACCCAAAAACTCACGGTTCGATCATCG-AGCCTAAAACGACATCGTTTCATCCCCG 419
|||||||||||||||||| ||||||| | || | || ||||||||| |||||||| | ||
Sbjct 361 ATTGACCCAAAAACTCACCGTTCGATTAACGTATCC-AAAACGACACCGTTTCATACTCG 419
Query 420 AAATGAAGATTTGAAGTCCACGTTTCCCGGT-T---C--TGT--T-AAACTAAAGATGGA 470
||| |||||| |||||||||||||||| | | | | ||| | ||| |||| | |||
Sbjct 420 AAACGAAGATGTGAAGTCCACGTTTCCTGATCTTAACGGTGTCATTAAATTAAAAACGGA 479
Query 471 GACTTCTTGTGAAAACTGTGCTTCTACGAGCGGTACGACTACGGACGAGGATTTACGGTT 530
|||||| ||||||||| ||||||| |||||||||||||||| ||||||||| |||||||
Sbjct 480 GACTTCATGTGAAAACGGTGCTTCAACGAGCGGTACGACTATAGACGAGGATCTACGGTT 539
Query 531 AAGTGTTGATTGTGATTACAGAT-ATGATCATC-TGGACAAGGAGCTAAACTTGGACCTA 588
|| |||||| |||||||||| || ||||||| | ||||||||||||||||||||||||||
Sbjct 540 AAATGTTGAGTGTGATTACA-ATTATGATCA-CGTGGACAAGGAGCTAAACTTGGACCTA 597
Query 589 ACACTCGGGTA 599
||||| |||||
Sbjct 598 ACACTGGGGTA 608
> Ahg489795 jgi|Araly1|489795|fgenesh2_kg.6__2929__AT4G09460.1
Length=850
Score = 438 bits (237), Expect = 2e-122
Identities = 350/405 (86%), Gaps = 6/405 (1%)
Strand=Plus/Plus
Query 1 ATGGGAAGATCACCATGTTGTGAAAAGGCTCACATGAACAAAGGAGCATGGACTAAAGAA 60
||||||||||| || ||||||||||| ||||||| ||||||||||| ||||||||||||
Sbjct 47 ATGGGAAGATCTCCTTGTTGTGAAAAAGCTCACACAAACAAAGGAGCTTGGACTAAAGAA 106
Query 61 GAAGATCAACGTCTTATTGATTATATACGTAATCATGGTGAAGGCTCTTGGCGTTCTCTT 120
|||||||||||||| | |||||||| |||||||| |||||||| | |||||| ||||||
Sbjct 107 GAAGATCAACGTCTCGTCGATTATATTCGTAATCACGGTGAAGGTTGTTGGCGATCTCTT 166
Query 121 CCTAAATCCGTTGGGTTGTTGCGTTGTGGAAAAAGTTGTAGATTAAGATGGATTAATTAC 180
|||||||||| ||| |||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 167 CCTAAATCCGCTGGATTGTTGCGTTGTGGTAAAAGTTGTAGATTGAGATGGATTAATTAC 226
Query 181 CTTCGTCCTGATCTTAAACGTGGAAATTTCACTGATGGTGAAGAGCAAATCATTGTCAAA 240
||||||||||||||||||||||| ||||| ||||||| ||||| |||||||| |||||
Sbjct 227 CTTCGTCCTGATCTTAAACGTGGTAATTTTACTGATGAAGAAGATCAAATCATCATCAAA 286
Query 241 CTTCATAGTTTATTTGGCAACAAATGGTCTTTGATTGCTGGGAA-ATTACCGGGAAGAAC 299
|| ||||| ||| | || ||||||||||| ||||| ||||| || |||||| ||||||||
Sbjct 287 CTCCATAGCTTACTCGGTAACAAATGGTCATTGATAGCTGG-AAGATTACCAGGAAGAAC 345
Query 300 CGATAATGAGATTAAAAATTATTGGAACACTCATATAAAAAGGAAGCTTCTTAACCGTGG 359
|||||||| || || |||||||||||||||||||| ||||| |||||||||| | |||
Sbjct 346 AGATAATGAAATCAAGAATTATTGGAACACTCATATTAAAAGAAAGCTTCTTAGTCATGG 405
Query 360 TATTGACCCAAAAACTCA-CGGTTCGATCATCGAG-CCTAAAACG 402
||||| ||| ||||||| || | |||| | ||| || ||||||
Sbjct 406 GATTGATCCACAAACTCATCG-TCCGATTAACGATTCC-AAAACG 448
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23407471038
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5