BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G35530.2
Length=4298
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473682 jgi|Araly1|473682|fgenesh2_kg.1__3636__AT1G35530.1 2621 0.0
Ahg914387 jgi|Araly1|914387|Al_scaffold_0001_4641 743 0.0
Ahg952031 jgi|Araly1|952031|scaffold_30700002.1 163 9e-39
Ahg946687 jgi|Araly1|946687|scaffold_702916.1 71.3 6e-11
> Ahg473682 jgi|Araly1|473682|fgenesh2_kg.1__3636__AT1G35530.1
Length=3966
Score = 2621 bits (1419), Expect = 0.0
Identities = 1652/1759 (94%), Gaps = 38/1759 (2%)
Strand=Plus/Plus
Query 126 ATGGGATCTAGGGTTCCAATAGAAACCATCGAAGAAGACGGCGAATTCGATTGGGAAGCA 185
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1 ATGGGATCTAGGGTTCCAATAGAAACCATCGAAGAAGACGAAGAGTTCGATTGGGAAGCA 60
Query 186 GCAGTCAAAGAAATCGACTTGGCTTGTCTTAAAACC-ACAA----AC-GCTTCTTCTTCT 239
||||||||||||||||||||||||||||| |||||| ||| | |||||||||||
Sbjct 61 GCAGTCAAAGAAATCGACTTGGCTTGTCTAAAAACCTCCAATGCTTCTTCTTCTTCTTCT 120
Query 240 TCGTCATCCCATTTCACTCCTTTGGCTAATCCACCAATTAC-GGCAAATCTCACTAAGCC 298
|| || ||||||||||||||||||||| |||| |||||||| || |||| |||||||||
Sbjct 121 TCTTCTTCCCATTTCACTCCTTTGGCTCATCCTCCAATTACAGG-AAATAGCACTAAGCC 179
Query 299 ACCTGCGAAGAGACAATCTACTCTCGATAAATTCATCGGCAGAACCGAACATAAACCGGA 358
|||||||| ||||||||||||||||||||||||||||| |||||||| |||| ||||||
Sbjct 180 TCCTGCGAAAAGACAATCTACTCTCGATAAATTCATCGGAAGAACCGAGCATAGACCGGA 239
Query 359 GAATC-A------T-CAAGTTG---TTT-CCG-A---G--TGTGGTGTTAACGATAACGA 400
||||| | | | ||| | ||| | | | ||||||| ||||||| ||||
Sbjct 240 GAATCAAGTTGTTTCCCAGTCGAATTTTGATGAATTTGAATGTGGTGGTAACGATGACGA 299
Query 401 TAATAGTCCTTTAGTTGGGATTGATCCTGAGGCAGCTAAAACTTGGATTTATCCAG-G-- 457
||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 300 TAAGAGTCCTTTAGTTGGGATTGATCCTGAGGCTGCTAAAACTTGGATTTATCCAGTGAA 359
Query 458 T---TTTGTTCCT-TTAAGAGATTATCAGTTTGCTATAACGAAGACTGCTTTGTTTTCGA 513
| ||||||| || ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 360 TGGGAGTGTTCCTCTT-AGAGATTATCAGTTTGCTATAACGAAGACCGCTTTGTTTTCGA 418
Query 514 ATACATTGGTGGCTTTGCCTACGGGACTTGGTAAAACGCTTATAGCTGCGGTTGTTATGT 573
||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||
Sbjct 419 ATACATTGGTGGCTTTGCCGACCGGACTTGGTAAAACGCTTATAGCTGCAGTTGTTATGT 478
Query 574 ATAATTACTTCAGATGGTTTCCACAAGGTAAAATAGTATTTGCGGCGCCTTCTAGGCCTC 633
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 479 ATAATTACTTCAGATGGTTTCCAGAAGGTAAAATTGTATTTGCGGCGCCTTCTAGGCCTC 538
Query 634 TTGTGATGCAGCAGATTGAGGCGTGTCATAATATTGTTGGAATACCACAAGAATGGACGA 693
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
Sbjct 539 TTGTGATGCAGCAGATTGAGGCATGTCATAATATTGTGGGAATACCACAAGAATGGACAA 598
Query 694 TTGACTTGACGGGTCAGACATGTCCTTCGAAAAGAGCTTTTTTGTGGAAAAGCAAACGGG 753
||||||||||||| |||||||| ||||| |||||||| || |||||||||||||||||||
Sbjct 599 TTGACTTGACGGGACAGACATGCCCTTCAAAAAGAGCCTTCTTGTGGAAAAGCAAACGGG 658
Query 754 TTTTCTTTGTCACTCCACAAGTGTTAGAGAAGGATATACAGTCAGGAACATGTCTTACTA 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TTTTCTTTGTCACTCCACAAGTGTTAGAGAAGGATATACAGTCAGGAACATGTCTTACTA 718
Query 814 ACTACTTGGTTTGCTTGGTGATCGACGAGGCACATCGAGCTTTAGGGAATTATTCTTATT 873
||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 719 ACTACTTGGTTTGTTTGGTGATCGACGAGGCACATCGAGCGTTAGGAAATTATTCTTATT 778
Query 874 GTGTTGTAGTTCGTGAGTTGATGGCGGTACCGA-TACAGCTGAGAATACTGGCTCTTACT 932
||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||
Sbjct 779 GTGTTGTAGTTCGTGAGTTGATGGCGGTACC-AGTACAATTGAGAATACTGGCTCTTACT 837
Query 933 GCAACTCCTGGATCAAAGACACAGGCCATCCAGGGTATCATTGATAATTTGCAGATATCC 992
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 838 GCAACTCCTGGATCAAAGACACTGGCCATCCAGGGTATCATTGATAATTTGCAGATATCC 897
Query 993 ACACTTGAATATCGAAATGAGAGTGACCATGATGTTTGCCCTTATGTCCACGACAGAAAA 1052
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 ACACTTGAATATCGAAATGAGAGTGACCATGATGTTTGCCCTTATGTCCACGACAGAAAA 957
Query 1053 TTAGAAGTCATCGAGGTTCCCTTGGGTCAAGATGCAGATGATGTATCGAAACGCCTGTTT 1112
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 958 TTAGAACTAATCGAGGTTCCCTTGGGTCAAGATGCAGATGATGTATCGAAACGCCTCTTT 1017
Query 1113 CATGTTATACGTCCATATGCAGTCAGGCTTAAAAACTTTGGGGTTAATCTAAATAGAGAT 1172
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 GATGTTATACGTCCGTATGCAGTCAGGCTTAAAAACTTTGGGGTTAATCTAAATAGAGAT 1077
Query 1173 ATACAAACTTTAAGTCCACACGAAGTACTTATGGCAAGGGATAAGTTTCGTCAAGCACCT 1232
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 TTACAGACTTTAAGTCCACACGAAGTACTTATGGCAAGGGATAAGTTTCGTCAAGCACCT 1137
Query 1233 CTACCAGGCCTTCCCCATGTAAATCACGGAGATGTAGAATCTTGCTTTGCAGCTCTTATC 1292
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1138 CTACCAGGCCTTCCCCATGTAAATCACGGAGATGTAGAATCTTGCTTTTCAGCTCTTATC 1197
Query 1293 ACTCTTTATCATATTCGTAAGCTCCTTTCTAGTCATGGAATAAGACCAGCGTATGAGATG 1352
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1198 ACTCTTTATCATATTCGTAAGCTCCTTTCTAGTCATGGAATAAGACCAGCATATGAGATG 1257
Query 1353 CTAGAAGAGAAATTGAAAGAAGGGCCATTTGCTAGGTTGATGAGTAAGAATGAAGATATT 1412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 CTAGAAGAGAAATTGAAAGAAGGGCCATTTGCTAGGTTGATGAGTAAGAATGAAGATATT 1317
Query 1413 AGGATGACGAAGCTTTTGATGCAGCAAAGGTTGTCACATGGAGCACCAAGCCCAAAATTG 1472
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 AGGAAGACAAAGCTTTTGATGCAGCAAAGGTTGTCACATGGAGCACCAAGCCCAAAATTG 1377
Query 1473 TCGAAGATGTTAGAAATACTGGTTGATCATTTCAAAGTGAAAGATCCGAA-GACATCACG 1531
|||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||
Sbjct 1378 TCGAAGATGTTAGAAATACTAGTTGATCATTTCAAAGTGAAAGATCC-AAGGACATCACG 1436
Query 1532 GGTCATTATTTTCTCAAATTTCAGAGGAAGCGTAAGAGACATAATGAACGCATTAAGTAA 1591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 GGTCATTATTTTCTCAAATTTCAGAGGAAGCGTAAGAGACATAATGAACGCATTAAGTAA 1496
Query 1592 TATTGGAGATATGGTCAAAGCAACTGAGTTTATTGGTCAAAGTTCAGGTAAGACATTGAA 1651
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1497 TATTGGAGATGTGGTCAAAGCAACCGAGTTTATTGGTCAAAGTTCAGGTAAGACACTGAA 1556
Query 1652 AGGCCAGTCGCAAAAAATTCAGCAGGCTGTTTTGGAGAAATTTAGAGCTGGGGGGTTCAA 1711
||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 AGGGCAGTCACAAAAAGTTCAGCAGGCTGTTTTGGAGAAATTTAGAGCTGGGGGGTTCAA 1616
Query 1712 TGTTATTGTCGCAACATCTATTGGTGAAGAAGGCTTGGATATCATGGAAGTTGACCTAGT 1771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1617 TGTTATTGTCGCAACATCTATTGGTGAAGAAGGCTTGGATATCATGGAAGTTGACCTAGT 1676
Query 1772 TATATGTTTTGATGCTAATGTATCTCCTCTGAGGATGATTCAACGGATGGGAAGAACTGG 1831
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||
Sbjct 1677 TATATGTTTTGATGCTAATGTATCCCCTCTGAGGATGATTCAACGCATGGGAAGAACCGG 1736
Query 1832 AAGGAAAAATAATGGTCGA 1850
|||||||||||||||||||
Sbjct 1737 AAGGAAAAATAATGGTCGA 1755
Score = 1954 bits (1058), Expect = 0.0
Identities = 1303/1417 (92%), Gaps = 33/1417 (2%)
Strand=Plus/Plus
Query 1986 ATTCCCCATGTTTATAAGCCAGAAGTTCAGCATGTTGAGTTTTCAATCAAGCAATTCGTT 2045
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1756 ATTCCCCATGTTTATAAGCCAGAAGTTCAGCATGTTGAGTTTTCAATCAAGCAATTCATT 1815
Query 2046 CCACGTGGAAAGAAACTACAAGAGGAGTATGCCACTGAGACTCCAGCTTTCCAGAAAAAG 2105
|||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 1816 CCACGTGGAACGAAACTACAAGATGAGTATGCCACTGAGACTCCAGCTTTCAAGAAAAAG 1875
Query 2106 CTTACACCTGCAGAGACGCATATGCTCGCTAAGTATTACAACAACCCCGATGAGGAAAAG 2165
|||||| ||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1876 CTTACATCTGCAGAAATGGATATGCTCGCTAAGTATTACAACAACCCCGATGAGGAAAAG 1935
Query 2166 TTGAGAGTGTCCTTAATTGCGTTCCCTCACTTCCAGACATTGCCATCCAAGGTGCACAAA 2225
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1936 TTGAGAGTGTCCTTAATTGCCTTCCCTCACTTCCAGACATTGCCATCCAAAGTGCACAAA 1995
Query 2226 GTAATGCATTCACGTCAAACAGGCATGTTAATTGACGCTATGCAGCACTTGCAAGAGCCA 2285
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1996 GTAATGCATTCACGTCAAACAGGCATGTTAATTGACGCTATGCAGCATTTGCAAGAGCCA 2055
Query 2286 ACTTTTTCAGAACAGAGTAAAAGCTTCTTCACTGAGTTTCGAGCTCCTTTGGGTGAAAGA 2345
||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 2056 ACTTTTTCAGAGCAGAGTAAAAGTTTCTTCACTGAGTTTGGAGCTCCTTTGGGTGAAAGA 2115
Query 2346 GAAGAGCTTGATACAGGTCTGAGGGTTACTAATGATCCAAAAGATCTACACTCTGTCCGT 2405
||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||
Sbjct 2116 GAAGAGCTTGATACAGGTCTGAGGGTTACTAATGATCCAAAAGATTTACACTGTTTCCGT 2175
Query 2406 GATTTGGAAGTCAACACATCACAGAGAAAGGCAAAACAAGTTGAATCTCCCACAAGCACC 2465
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2176 GAGTTGGAAGTCAACACATCACAGAGAAAGGCAAAACAAGTTGAATCTCCCACAAGCACC 2235
Query 2466 TTAGAGACAACAGAGAAGGATTACGAAGAATCTTCACCCACACACCGTTATCTTTTCAGT 2525
|||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2236 TTAGAGACTACAGAGAAAGATTACGAAGAATCTTCACCCACACACTGTTATCTTTTCAGT 2295
Query 2526 TCAGAATGTGCATCCGTTGATACTCTGGGGAACGTCTTCGTAATGCCAGTTCCTCTTTTA 2585
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 2296 TCAGAATGTGCAGCCGTTGATACTCTGGGGAAGGTCTTCGTAATGCCAGTTCCTCTTTCA 2355
Query 2586 TTCTTTCCTAATGTTCTGGAGTCAGACAATACGCCTCTGCCTAAAACAGAAAAACAACAT 2645
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2356 TTCTTTTCTAATGTTCTGGAGTCAGACAATATGCCTCTGCCTAAAACAGAAAAACAACAT 2415
Query 2646 TCTTGCCGGAATACATCTCACATTGACTTAGTTCC-AGTAGATACTTCGGAAAAACATCG 2704
||||||| ||||| || |||||||||| |||||| | |||||||| ||| |||||||||
Sbjct 2416 TCTTGCCAGAATATTTCCCACATTGACTCAGTTCCGA-TAGATACTCCGGCAAAACATCG 2474
Query 2705 GCAAGATAATATCTCATG-CAAGTTAAAGGAAAGATTCTCGCCAGACGGTGCCAGCGAGA 2763
|||||||||||| ||| | ||||||||| ||||||||||||||||||||||||| | |||
Sbjct 2475 GCAAGATAATATTTCA-GACAAGTTAAAAGAAAGATTCTCGCCAGACGGTGCCAACAAGA 2533
Query 2764 CACTAGAGACTCATAGCCTTGTGAAAAGGAACTCCACCAGAGTAGGTGAAGATGATGTAG 2823
||||||||| |||||||| |||||||||| |||||||||| |||||| |||| ||||| |
Sbjct 2534 CACTAGAGAATCATAGCCATGTGAAAAGGCACTCCACCAGTGTAGGTCAAGAAGATGTTG 2593
Query 2824 CGAATTCTGTTGGAGAAATTGTGTTATCATCGGATGAAGATGACTGTGAGGGATTGGAGC 2883
||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 2594 GGAATTCTGTTGGAGAAATTGTGTTATCATCGGATGAAGACGACTGGGAGGGCTTGGAGC 2653
Query 2884 TTAGTCCACGGCTCACTAACTTCATCAAGAGCGGCATTGTTCCAGAGTCACCTGTCTATG 2943
|||||||| | |||||||| ||||||||||| ||| ||||||||||||||||||||||||
Sbjct 2654 TTAGTCCAAGACTCACTAATTTCATCAAGAGTGGCGTTGTTCCAGAGTCACCTGTCTATG 2713
Query 2944 ACCAAGG-G--G-AAGCGAA-CAGAGA-AGAAGATCTTGAATTTCCTCAGCTTTCTTCAC 2997
||||||| | | || ||| || | | |||||| ||||| ||||||||| |||||||||
Sbjct 2714 ACCAAGGAGTTGCAAATGAAGCAAATAGAGAAGACCTTGATTTTCCTCAGGTTTCTTCAC 2773
Query 2998 CCATGAGGTTCAGTAACGAATTGGCAGGAGAGTCTTCTTTCCCTGAGAGAAAGGTTCAGC 3057
|||||||||| ||||||||||||||||||||| |||||| |||||||| |||||||||||
Sbjct 2774 CCATGAGGTTAAGTAACGAATTGGCAGGAGAGCCTTCTTCCCCTGAGACAAAGGTTCAGC 2833
Query 3058 ATAAGTGCAACGATTATAACATTGTGTCTACAACCACTGAATTGAGAACTCCTCAGAAGG 3117
|| | | | | | | ||||||| |||||||||||||||||||||||
Sbjct 2834 AT--G--C---G-T-----C-T-------ACAACCAATGAATTGAGAACTCCTCAGAAGG 2872
Query 3118 AGGTAGGTTTGGCCAACGGAACAGAATGCTTGGCTGTTTCTCCTATTCCTGAGGATTGGA 3177
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 2873 AGGTAGGTACGGCCAACGGAACAGAATGCTTGGCTGTTTCTCCCATTCCTGAGGAGTGGA 2932
Query 3178 GAACTCCCTTGGCGAATCTGACAAACACAAACAGCAGCGCTCGCAAAGATTGGCGGGTGA 3237
||||||||||||| ||||| ||||||||||||||||| ||| | ||||||||||||||||
Sbjct 2933 GAACTCCCTTGGCTAATCTCACAAACACAAACAGCAGTGCTAGTAAAGATTGGCGGGTGA 2992
Query 3238 GTTCTGGAGAAAAGTTAGAAACTCTTCGACAGCCTCGCAAGTTGAAGAGACTACGTAGAC 3297
||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 2993 GTTCTGGAGAAAAGTCAGAAACTATTCGACAGCCTCGAAAGTTGAAGAGACTACGTAGAC 3052
Query 3298 TTGGAGATTGCTCGAGTGCTGTAAAGGAGAATTATCCTGGTATTACAGAGGCAGACCATA 3357
|||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 3053 TTGGCGATTGCTCGAGTGCTGTAAAGGAGAATAATCCTGGTATTAAAGAGGCAGACCATA 3112
Query 3358 TCAGATCTCGTTCTCG-CGGTAAAAAGCACATTAGAG 3393
|||||||||||||||| || |||||||| ||||||||
Sbjct 3113 TCAGATCTCGTTCTCGACG-TAAAAAGCTCATTAGAG 3148
Score = 819 bits (443), Expect = 0.0
Identities = 563/617 (91%), Gaps = 23/617 (4%)
Strand=Plus/Plus
Query 3698 GGTCAATGAGCTTATTAAAAATCACAAGGTATCCTTCCACAGGCGTTCTCTTCTCAGCCA 3757
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 3357 GGTCAATGAGCTTACTAAAAATCACAAGGTATCCTTCCACAGACGTTCTCTTCTCAGCCA 3416
Query 3758 GTCACCATTACCGGCGAGATTTCGTGATTTAGCCGCATCAAGTCTGAGTCCTTATTCTGC 3817
|||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||
Sbjct 3417 GTCACCATTACCGGCGAGGTTTCGTGATTTAGCCGCATCAAGTCCGAGTCCCTATTCTGC 3476
Query 3818 TGGACCCTTGACGAGAATAAATGAGAGCAGAAGCGACTCAGATAAATCATTGTCTTC-TC 3876
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 3477 TGGACCCTTGAAGAGAATAAATGAGAGCAGAAGCGACTCAGATAAATCATTGTCTTCGTC 3536
Query 3877 T-T-CGAACACCAAAAACAACAAACTCTGAGTCAAACCAAGATGCAATGATGATAGGAAA 3934
| | ||||| ||| ||||||||||||||||||||||||||||||||||| | |||||| |
Sbjct 3537 TCTTCGAACCCCACAAACAACAAACTCTGAGTCAAACCAAGATGCAATGGTCATAGGAGA 3596
Query 3935 CCTTTCGGTAGTACAAATCTCGTCAGATAGCCGGAAAAGGAAATTTAGCTTATGCAACTC 3994
| ||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct 3597 CTTTTCGGTAGTACAAATCTCATCAGAGAGCCGGAAAAGGAAATTCAGCTTATGCAACTC 3656
Query 3995 -GGCGAATGCCCCCGTGATTAACTTAGAAAGCAAGTTTGCAGCTCATGCACAAGCCACGG 4053
|| ||||| ||||||||||||||||||||||||||||||||| | || || |||| |
Sbjct 3657 AGG-GAATGTCCCCGTGATTAACTTAGAAAGCAAGTTTGCAGC--A--CA-AA-CCACAG 3709
Query 4054 AGAAGGAAAGCCATGAAGGCGTGAGAAGCAATGCAGGTGCGTTAGAGTACAatgatg--- 4110
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 3710 AGAAGGAAAGCCATGAAGGCGTGAGAAGCAATGCAGGTGCATTAGAATACAATGATGGTG 3769
Query 4111 ---a---tgatgatgatgCATTCTTTGCGACACTAGACTTTGATGCAATGGAAGCACAAG 4164
| |||||||||||||||||| || ||||||||||||||||| |||||||||||||
Sbjct 3770 TTGACGATGATGATGATGCATTCTTCGCAACACTAGACTTTGATGCCATGGAAGCACAAG 3829
Query 4165 CCACATTGTTATTGTCGAAACAGAGATCCGAAGCAAAAGAGAAAGAAGA--C-GCAACGG 4221
|||||||||||||||| |||||||| || |||||||||||||| ||||| | |||||||
Sbjct 3830 CCACATTGTTATTGTCTAAACAGAGGTCAGAAGCAAAAGAGAAGGAAGATGCAGCAACGG 3889
Query 4222 TTATACCTAATCCAGGCATGCAGAGAAGTGATGGTATGGAGAAAGATGCACCATCTTTTG 4281
||||| | ||||||||||||||||| ||||||||| ||||||||||||| ||||||||||
Sbjct 3890 TTATAGCAAATCCAGGCATGCAGAGGAGTGATGGTGTGGAGAAAGATGCGCCATCTTTTG 3949
Query 4282 ATCTTGGTCTGTGGTGA 4298
|||||||||||||||||
Sbjct 3950 ATCTTGGTCTGTGGTGA 3966
Score = 294 bits (159), Expect = 3e-78
Identities = 167/171 (98%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 3459 AAGAAGAAGATGATCATGGATGATGATGTCCAAGTCTTCATTGACGAGGAAGCTGAGGTC 3518
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 3151 AAGAAGAAGATGATCATAGATGATGATGTCCAAGTCTTCATTGACGAAGAAGCTGAGGTC 3210
Query 3519 TCTTCGGGAGCAGAGATGTCGGCTGATGAGAACGAAGATGTGACTGGCGATTCATTTGAA 3578
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3211 TCTTCGGGAGCAGAAATGTCGGCTGATGAGAACGAAGATGTGACTGGCGATTCATTTGAA 3270
Query 3579 GATAGTTTCATAGATGACGGAACAATGCCTACAGCAAATACTCAAGCCGAG 3629
|||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 3271 GATAGTTTCATAGATGACGGGACAATGCCTACAGCAAATACTCAAGCCGAG 3321
> Ahg914387 jgi|Araly1|914387|Al_scaffold_0001_4641
Length=798
Score = 743 bits (402), Expect = 0.0
Identities = 627/725 (86%), Gaps = 58/725 (8%)
Strand=Plus/Plus
Query 122 AGAAATGGGATCTAGGGTTCCAATAGAAACCATCGAAGAAGACGGCGAATTCGATTGGGA 181
||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 48 AGAGATGGGATCTAGGGTTCCAATAGAAACCATCGAAGAAGACGAAGAGTTCGATTGGGA 107
Query 182 AGCAGCAGTCAAAGAAATCGACTTGGCTTGTCTTAAAACCACAAACGCTTCTTCTTCTTC 241
|||||||||||||||||||||||||||||||||||||||| | || ||||||||||| |
Sbjct 108 AGCAGCAGTCAAAGAAATCGACTTGGCTTGTCTTAAAACCTCCAATGCTTCTTCTTC-T- 165
Query 242 GTCATCCCATTTCACTCCTTTGGCTAATCCACCAATTAC-GGCAAATCTCACTAAGCCAC 300
| | ||||||||||||||||||| |||| |||||||| | |||| ||||||||| |
Sbjct 166 -T--T-CCATTTCACTCCTTTGGCTCATCCTCCAATTACAAG-AAATAGCACTAAGCCTC 220
Query 301 CTGCGAAGAGACAATCTACTCTCGATAAATTCATCGGCAGAACCGAACATAAACCGGAGA 360
||| ||| ||||||||||||||||||||||||||| | |||||||| ||||||||||||
Sbjct 221 CTGTGAAAAGACAATCTACTCTCGATAAATTCATCAGAAGAACCGAGCATAAACCGGAG- 279
Query 361 ATCATCAAGTTGTTT-C----CG-A----G-TG----TG-GTGT--TAACGATAACGATA 402
| |||||||||||| | || | | || || |||| | | ||||||||
Sbjct 280 A--ATCAAGTTGTTTCCGAGTCGAATTTTGATGAATTTGAGTGTGGTGGTGGTAACGATA 337
Query 403 ATAGTCCTTTAGTTGGGATTGATCCTGAGGCAGCTAAAACTTGGATTTATCCAG-G--T- 458
| |||||| ||||||| ||||||||||||||||||||||||||||||||||||| | |
Sbjct 338 AGAGTCCTATAGTTGGTATTGATCCTGAGGCAGCTAAAACTTGGATTTATCCAGTGAATG 397
Query 459 --TTTGTTCCT-TTAAGAGATTATCAGTTTGCTATAACGAAGACTGCTTTGTTTTCGAAT 515
||||||| || |||||||||||||||||||||||||| || |||||||||||||||
Sbjct 398 GGAGTGTTCCTCTT-AGAGATTATCAGTTTGCTATAACGAATACCGCTTTGTTTTCGAAT 456
Query 516 ACATTGGTGGCTTTGCCTACGGGACTTGGTAAAACGCTTATAGCTGCGGTTGTTATGTAT 575
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 457 ACATTGGTGGCTTTGCCTACGGGACTTGGTAAAACGCTTATAGCTGCAGTTGTTATGTAT 516
Query 576 AATTACTTCAGATGGTTTCCACAAGGTAAAATAGTATTTGCGGCGCCTTCTAGGCCTCTT 635
||||||||||||| ||||||| |||||||||| ||||||||||| || ||||||||||||
Sbjct 517 AATTACTTCAGATTGTTTCCAGAAGGTAAAATTGTATTTGCGGCACCGTCTAGGCCTCTT 576
Query 636 GTGATGCAGCAGATTGAGGCGTGTCATAATATTGTTGGAATACC---A-C----A-A--- 683
|||||||||||||||||||||||||||||||||||||||||||| | | | |
Sbjct 577 GTGATGCAGCAGATTGAGGCGTGTCATAATATTGTTGGAATACCTCGAACTTTTAGATAT 636
Query 684 ------GA-A--TGGACGATTGACTTGACGGGTCAGACATGTCCTTCGAAAAGAGCTTTT 734
|| | ||||| ||||||||||||||||||||||| |||||||||||||| ||
Sbjct 637 ATTTTTGAGAAATGGACTATTGACTTGACGGGTCAGACATGCCCTTCGAAAAGAGCCTTC 696
Query 735 TTGTGGAAAAGCAAACGGGTTTTCTTTGTCACTCCACAAGTGTTAGAGAAGGATATACAG 794
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 697 TTGTGGAAAAGCAAACGGGTTTTCTTTGTCACTTCACAAGTGTTAGAGAAGGATATACAG 756
Query 795 TCAGG 799
|||||
Sbjct 757 TCAGG 761
> Ahg952031 jgi|Araly1|952031|scaffold_30700002.1
Length=461
Score = 163 bits (88), Expect = 9e-39
Identities = 125/142 (88%), Gaps = 6/142 (4%)
Strand=Plus/Plus
Query 122 AGAAATGGGATCTAGGGTTCCAATAGAAACCATCGAAGAAGACGGCGAATTCGATTGGGA 181
||| |||| ||||||||||| ||||||||||||||||||||||| || |||| ||||||
Sbjct 60 AGAGATGGAATCTAGGGTTCTAATAGAAACCATCGAAGAAGACGAAGAGTTCGCTTGGGA 119
Query 182 AGCAGCAGTCAAAGAAATCGACTTGGCTTGTCTTAAAACCACAAACGCTTCTTCTTCTTC 241
||||||||||||||||||||||||| |||||||||||||| | || ||||||||||||||
Sbjct 120 AGCAGCAGTCAAAGAAATCGACTTGCCTTGTCTTAAAACCTCCAATGCTTCTTCTTCTTC 179
Query 242 GTCATCCCATTTCACTCCTTTG 263
| | ||||||||||||||
Sbjct 180 --C--C--ATTTCACTCCTTTG 195
> Ahg946687 jgi|Araly1|946687|scaffold_702916.1
Length=463
Score = 71.3 bits (38), Expect = 6e-11
Identities = 42/44 (95%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 122 AGAAATGGGATCTAGGGTTCCAATAGAAACCATCGAAGAAGACG 165
||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 71 AGAGATGGAATCTAGGGTTCCAATAGAAACCATCGAAGAAGACG 114
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 162543894283
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5