BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G35537.1
Length=246
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913416 jgi|Araly1|913416|Al_scaffold_0001_3670 372 7e-103
> Ahg913416 jgi|Araly1|913416|Al_scaffold_0001_3670
Length=246
Score = 372 bits (201), Expect = 7e-103
Identities = 232/247 (94%), Gaps = 2/247 (1%)
Strand=Plus/Plus
Query 1 ATGGTTTCATCAAGGAAATGTGTTTTCCTTGTGTTCTTATGTATGGTTGTTCTCTTGAAT 60
|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 1 ATGGTTTCATCAAGAAAATGTGTTTTCCTTGTGTTCTTATGTCTGGTTGTTCTCTTGATT 60
Query 61 CCAAAATCTACAAAAGCGAAAGATATTGATGGAAGGAAGCCCCTCTTGATAGGTACTTGC 120
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 61 CCAAAATCTACAAAAGCGAAAGATATTGATGGAAGGAAGCCTCTTTTGATAGGTACTTGC 120
Query 121 ATAGAGTTTCCAACAGAAAAATGCAATAAGACATGCATTGAATCAAATTTTGCTGGTGGA 180
||||||||||| |||||| ||||||||||||||||||||| |||||||||||| |||||
Sbjct 121 GTAGAGTTTCCAGCAGAAAGATGCAATAAGACATGCATTGATTCAAATTTTGCTAGTGGA 180
Query 181 AAATGCGTTCATATTGGTCAAAGCCTTGACTTTGTATGTGTTTGTT-TCCCAAAATATTA 239
|||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||| |
Sbjct 181 AAATGCGTTCATGTTGGTCAAAGCCTTGACTTTGTATGTGTTTGTTATCC-AAAATATAA 239
Query 240 TATATAA 246
||||||
Sbjct 240 AATATAA 246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8515982203
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5