BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G35550.1
Length=631
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496177 jgi|Araly1|496177|fgenesh2_kg.8__1993__AT5G60390.1 436 7e-122
Ahg311847 jgi|Araly1|311847|fgenesh1_pm.C_scaffold_1000627 425 1e-118
Ahg470837 jgi|Araly1|470837|fgenesh2_kg.1__791__AT1G07930.1 409 1e-113
Ahg923245 jgi|Araly1|923245|scaffold_104526.1 250 1e-65
> Ahg496177 jgi|Araly1|496177|fgenesh2_kg.8__1993__AT5G60390.1
Length=1599
Score = 436 bits (236), Expect = 7e-122
Identities = 343/396 (87%), Gaps = 1/396 (0%)
Strand=Plus/Plus
Query 133 GGA-CTTAAGCGTGGGTACGTCGCCTCAAACTCCAAGGATGATCCTGCAAAGGTTGCTGC 191
||| |||||| | ||||| || ||||| |||||||||||||| || || |||| ||||||
Sbjct 987 GGATCTTAAGAGAGGGTATGTTGCCTCTAACTCCAAGGATGACCCAGCTAAGGGTGCTGC 1046
Query 192 TAGCTTCACCTCCCAGGTCGTCATCATGAACCACCTTGGTCAGATTAAAAATGGTTACAC 251
| ||||||||||||||| ||||||||||||||| |||||||||| || ||||| |
Sbjct 1047 CAACTTCACCTCCCAGGTTATCATCATGAACCACCCTGGTCAGATTGGTAACGGTTATGC 1106
Query 252 CCCAGTTCTTGATTGCCACACCTCTCACATTGCAGTCAAGTTCTCTGAGATCTTGACCAA 311
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1107 CCCAGTTCTCGATTGCCACACCTCTCACATTGCAGTCAAGTTCTCTGAGATCTTGACCAA 1166
Query 312 GATTGACTGGCGTACTGGTCATGAGATTGAGAAGGAGCCAAAGTTTTTAAAGAACAGTGA 371
||||||| ||||| ||||| | ||||||||||||||||| |||||||| ||||| ||||
Sbjct 1167 GATTGACAGGCGTTCTGGTAAGGAGATTGAGAAGGAGCCCAAGTTTTTGAAGAATGGTGA 1226
Query 372 GGCCGCTATTATTAATATGACTCCCACCAAGCCTATGGTGGTTGAGGCTTACTCTGCGTA 431
|| | ||| |||| |||||||| |||||||| ||||| |||||| ||| ||| | |||
Sbjct 1227 CGCTGGTATGGTTAAGATGACTCCAACCAAGCCCATGGTTGTTGAGACTTTCTCCGAGTA 1286
Query 432 CCCACCCCTGGGACGTTTTGCTATTAGGGACATGAGGCAAACCGTTGGTGTTGGAGTTAT 491
|||||| |||||||||||||| |||||||||||||||| ||||||| |||||| |||||
Sbjct 1287 CCCACCATTGGGACGTTTTGCTGTTAGGGACATGAGGCAGACCGTTGCTGTTGGTGTTAT 1346
Query 492 CAAGAGTGTTGTCAAGAAGGACCCAAGTGGAGCCAA 527
|||||| || | |||||||||||||| |||||||||
Sbjct 1347 CAAGAGCGTGGACAAGAAGGACCCAACTGGAGCCAA 1382
> Ahg311847 jgi|Araly1|311847|fgenesh1_pm.C_scaffold_1000627
Length=2856
Score = 425 bits (230), Expect = 1e-118
Identities = 342/397 (86%), Gaps = 3/397 (1%)
Strand=Plus/Plus
Query 133 GGA-CTTAAGCGTGGGTACGTCGCCTCAAACTCCAAGGATGATCCTGCAAAGGTTGCTGC 191
||| |||||| | |||||||||||||| ||||| |||||||| ||||| |||| || ||
Sbjct 2424 GGATCTTAAGAGAGGGTACGTCGCCTCCAACTCAAAGGATGACCCTGCCAAGGGAGCAGC 2483
Query 192 TAGCTTCACCTCCCAGGTCGTCATCATGAACCACCTTGGTCAGATTAAAAATGGTTACAC 251
| |||||||||||||||| ||||||||||||||| |||||||||| || |||||| |
Sbjct 2484 CAACTTCACCTCCCAGGTCATCATCATGAACCACCCTGGTCAGATTGGTAACGGTTACGC 2543
Query 252 CCCAGTTCTTGATTGCCACACCTCTCACATTGCAGTCAAGTTCTCTGAGATCTTGACCAA 311
||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2544 CCCTGTCCTCGATTGCCACACCTCTCACATTGCAGTCAAGTTCTCTGAGATCTTGACCAA 2603
Query 312 GATTGACTGGCGTACTGGTCATGAGATTGAGAAGGAGCCAAAGTTTTTAAAGAACAGTGA 371
||||||| ||||| ||||| | ||||||||||||||||| |||||||| ||||| | ||
Sbjct 2604 GATTGACAGGCGTTCTGGTAAGGAGATTGAGAAGGAGCCCAAGTTTTTGAAGAATGGGGA 2663
Query 372 GGCCGCTATTATTAATATGACTCCCACCAAGCCTATGGTGGTTGAGGC-TTACTCTGCGT 430
|||| ||| |||| |||||||| |||||||| ||||| || ||| | || ||||| ||
Sbjct 2664 TGCCGGTATGGTTAAGATGACTCCAACCAAGCCCATGGTTGTGGAGACCTT-CTCTGAGT 2722
Query 431 ACCCACCCCTGGGACGTTTTGCTATTAGGGACATGAGGCAAACCGTTGGTGTTGGAGTTA 490
||||||| || ||||||||||| | |||||||||||||| || |||| |||||| ||||
Sbjct 2723 ACCCACCACTAGGACGTTTTGCCGTGAGGGACATGAGGCAGACTGTTGCTGTTGGTGTTA 2782
Query 491 TCAAGAGTGTTGTCAAGAAGGACCCAAGTGGAGCCAA 527
|||||||||||| |||||||||||||| |||||||||
Sbjct 2783 TCAAGAGTGTTGACAAGAAGGACCCAACTGGAGCCAA 2819
Score = 381 bits (206), Expect = 3e-105
Identities = 335/398 (84%), Gaps = 5/398 (1%)
Strand=Plus/Plus
Query 133 GGA-CTTAAGCGTGGGTACGTCGCCTCAAACTCCAAGGATGATCCTGCAAAGGTTGCTGC 191
||| |||||| | |||||||||||||| ||||| |||||||| ||||| |||| || ||
Sbjct 918 GGATCTTAAGAGAGGGTACGTCGCCTCCAACTCAAAGGATGACCCTGCCAAGGGAGCAGC 977
Query 192 TAGCTTCACCTCCCAGGTCGTCATCATGAACCACCTTGGTCAGATTAAAAATGGTTACAC 251
| |||||||||||||||| ||||||||||||||| ||||||||| || |||||| |
Sbjct 978 CAACTTCACCTCCCAGGTCATCATCATGAACCACCCTGGTCAGATCGGTAACGGTTACGC 1037
Query 252 CCCAGTTCTTGATTGCCACACCTCTCACATTGCAGTCAAGTTCTCTGAGATCTTGACCAA 311
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1038 CCCAGTTCTCGATTGCCACACCTCACACATTGCAGTCAAGTTCTCTGAGATCTTGACCAA 1097
Query 312 GATTGACTGGCGTACTGGTCATGAGATTGAGAAGGAGCC-AAAGTTTTTAAAGAACAGTG 370
||||||| ||||| ||||| | ||||||||||||||||| ||| || || ||||| |||
Sbjct 1098 GATTGACAGGCGTTCTGGTAAGGAGATTGAGAAGGAGCCCAAA-TTCTTGAAGAATGGTG 1156
Query 371 AGGCCGCTATTATTAATATGACTCCCACCAAGCCTATGGTGGTTGAGGC-TTACTCTGCG 429
| || | ||| | || |||||||| |||||||| ||||| || ||| | || ||||| |
Sbjct 1157 ATGCTGGTATGGTGAAGATGACTCCAACCAAGCCCATGGTTGTGGAGACCTT-CTCTGAG 1215
Query 430 TACCCACCCCTGGGACGTTTTGCTATTAGGGACATGAGGCAAACCGTTGGTGTTGGAGTT 489
||||||||||| ||||||||||| | |||||||||||||| || |||| || || ||
Sbjct 1216 TACCCACCCCTTGGACGTTTTGCCGTGAGGGACATGAGGCAGACTGTTGCAGTCGGTGTC 1275
Query 490 ATCAAGAGTGTTGTCAAGAAGGACCCAAGTGGAGCCAA 527
|||||||| || | |||||||||||||| ||||||||
Sbjct 1276 ATCAAGAGCGTGGACAAGAAGGACCCAACCGGAGCCAA 1313
> Ahg470837 jgi|Araly1|470837|fgenesh2_kg.1__791__AT1G07930.1
Length=1522
Score = 409 bits (221), Expect = 1e-113
Identities = 339/397 (85%), Gaps = 3/397 (1%)
Strand=Plus/Plus
Query 133 GGA-CTTAAGCGTGGGTACGTCGCCTCAAACTCCAAGGATGATCCTGCAAAGGTTGCTGC 191
||| |||||| | |||||||||||||| ||||| |||||||| ||||| |||| || ||
Sbjct 923 GGATCTTAAGAGAGGGTACGTCGCCTCCAACTCAAAGGATGACCCTGCCAAGGGAGCAGC 982
Query 192 TAGCTTCACCTCCCAGGTCGTCATCATGAACCACCTTGGTCAGATTAAAAATGGTTACAC 251
| |||||||||||||||| ||||||||||||||| |||||||||| || |||||| |
Sbjct 983 CAACTTCACCTCCCAGGTCATCATCATGAACCACCCTGGTCAGATTGGTAACGGTTACGC 1042
Query 252 CCCAGTTCTTGATTGCCACACCTCTCACATTGCAGTCAAGTTCTCTGAGATCTTGACCAA 311
||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1043 CCCTGTCCTCGATTGCCACACCTCTCACATTGCAGTCAAGTTCTCTGAGATCTTGACCAA 1102
Query 312 GATTGACTGGCGTACTGGTCATGAGATTGAGAAGGAGCCAAAGTTTTTAAAGAACAGTGA 371
||||||| ||||| ||||| | ||||||||||||||||| |||||||| ||||| | ||
Sbjct 1103 GATTGACAGGCGTTCTGGTAAGGAGATTGAGAAGGAGCCCAAGTTTTTGAAGAATGGGGA 1162
Query 372 GGCCGCTATTATTAATATGACTCCCACCAAGCCTATGGTGGTTGAGGC-TTACTCTGCGT 430
|||| ||| |||| |||||||| |||||||| ||||| || ||| | || ||||| ||
Sbjct 1163 TGCCGGTATGGTTAAGATGACTCCGACCAAGCCCATGGTTGTGGAGACCTT-CTCTGAGT 1221
Query 431 ACCCACCCCTGGGACGTTTTGCTATTAGGGACATGAGGCAAACCGTTGGTGTTGGAGTTA 490
|||||||||| ||||||||||| | |||||||||||||| || |||| || || || |
Sbjct 1222 ACCCACCCCTTGGACGTTTTGCGGTGAGGGACATGAGGCAGACTGTTGCAGTCGGTGTCA 1281
Query 491 TCAAGAGTGTTGTCAAGAAGGACCCAAGTGGAGCCAA 527
|||||||||||| |||||||||||||| ||||||||
Sbjct 1282 TCAAGAGTGTTGACAAGAAGGACCCAACCGGAGCCAA 1318
> Ahg923245 jgi|Araly1|923245|scaffold_104526.1
Length=482
Score = 250 bits (135), Expect = 1e-65
Identities = 307/385 (80%), Gaps = 32/385 (8%)
Strand=Plus/Plus
Query 136 CTTAAGCGTGGGTACGTCGCCTCAAACTCCAAGGATGATCCTGCAAAGGTTGCTGCTAGC 195
|||||||||||||||||||| ||||||||||||||||||| ||| |||| |||||| | |
Sbjct 102 CTTAAGCGTGGGTACGTCGCGTCAAACTCCAAGGATGATCATGCTAAGGGTGCTGCCAAC 161
Query 196 TTCACCTCCCAGGTCGTCATCATGAACCACCTTGGTCAGA-T--TAA-----A-----A- 241
||||| ||||||||| |||||| ||||||| | |||||| | ||| | |
Sbjct 162 TTCACTTCCCAGGTCATCATCAAAAACCACCCTAGTCAGATTAGTAATGGTTACGCCCAG 221
Query 242 ---------A-TGGTTACACCCCAGTTCTTGATTGCCACACCTCTCACATTGCAGTCAAG 291
| ||||||| |||| |||||||||||||||||||||||||||| ||||||
Sbjct 222 TGGTCCGCCACTGGTTACGCCCCGGTTCTTGATTGCCACACCTCTCACATTGTAGTCAAA 281
Query 292 TTCTCTGAGATCTTGACCAAGATTGACTGGCG-TACTGGTCATGAG--ATTGAGAAGGAG 348
|||||||||||||||||||||||| || |||| | | || | || |||||||| |||
Sbjct 282 TTCTCTGAGATCTTGACCAAGATTAACAGGCGCT-CAAGT-A-GAATTATTGAGAATGAG 338
Query 349 CC-AAAGTTTTTAAAGAACAGTGAGGCCGCTATTATTAATATGACTCCCACCAAGCCTAT 407
|| |||||||| ||||||| |||| || |||| | || |||||||| ||||||| |||
Sbjct 339 CCCAAAGTTTT-AAAGAACGGTGATGCAGCTACGGTCAAGATGACTCCTACCAAGCTTAT 397
Query 408 GGTGGTTGAGGCTTACTCTGCGTACCCACCCCTGGGACGTTTTGCTATTAGGGACATGAG 467
|||||| ||||||| |||| ||||||||| || ||||||| || |||||||||||||
Sbjct 398 GGTGGTCGAGGCTTTCTCTAAATACCCACCCTTGAGACGTTTCACTGTTAGGGACATGAG 457
Query 468 GCAAACCGTTGGTGTTGGAGTTATC 492
| ||| |||| |||||||||||||
Sbjct 458 GTAAATTGTTGATGTTGGAGTTATC 482
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23102487702
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5