BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G35580.1
Length=2066
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922723 jgi|Araly1|922723|scaffold_104004.1 2700 0.0
> Ahg922723 jgi|Araly1|922723|scaffold_104004.1
Length=1698
Score = 2700 bits (1462), Expect = 0.0
Identities = 1615/1690 (96%), Gaps = 6/1690 (0%)
Strand=Plus/Plus
Query 146 AGTGTTATAATGGAAGGTGTTGGACTAAGAGCTGTAGGATCACACTGTTCTTTATCTGAG 205
|||| | |||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 13 AGTG-TGTAATGGAAGGTGGTGGACTAAGAGCTGTGGGATCACACTGTTCTTTATCTGAG 71
Query 206 ATGGATGATCTTGATTTGACTCGAGCTTTGGATAAACCAAGATTGAAGATCGAAAGGAAG 265
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 72 ATGGATGATCTTGATTTGACTCGAGCTTTGGATAAACCAAGATTGAAGATTGAAAGGAAG 131
Query 266 AGATCGTTTGATGAAAGATCGATGAGTGAGCTATCGACTGGTTACAGTAGACATGACGGT 325
|||||||||||||| || ||||||||||| ||||||||||||| |||||||||||||||
Sbjct 132 AGATCGTTTGATGAGAGGTCGATGAGTGAATTATCGACTGGTTATAGTAGACATGACGGT 191
Query 326 ATACACGATTCGCCGCGAGGTAGATCGGTGCTTGATACGCCTCTTTCTTCTGCTAGAAAC 385
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 ATTTACGATTCGCCAAGAGGTAGATCGGTGCTTGATACGCCTCTTTCTTCTGCTAGAAAC 251
Query 386 TCCTTTGAGCCTCATCCTATGATGGCTGAAGCTTGGGAGGCTTTAAGAAGGTCAATGGTC 445
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 252 TCCTTTGAGCCTCATCCTATGATGGCTGAGGCTTGGGAGGCTTTAAGAAGGTCAATGGTT 311
Query 446 TTCTTCCGTGGTCAACCTGTTGGTACTCTTGCCGCGGTTGATAATACTACCGATGAAGTC 505
||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||| |||
Sbjct 312 TTCTTTCGTGGTCAACCCGTTGGTACTCTTGCCGCGGTTGATAATACTACTGATGAGGTC 371
Query 506 TTGAACTATGATCAGGTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATG 565
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 372 TTGAACTATGATCAGGTGTTTGTGAGGGATTTTGTACCGAGTGCGCTGGCGTTTTTGATG 431
Query 566 AATGGAGAACCGGATATAGTGAAGCATTTTTTGCTTAAGACACTTCAGCTGCAAGGTTGG 625
||||||||||||||||||||||| || || |||||||||||||||||||| |||||||||
Sbjct 432 AATGGAGAACCGGATATAGTGAAACACTTCTTGCTTAAGACACTTCAGCTTCAAGGTTGG 491
Query 626 GAGAAACGTGTGGATCGGTTTAAGTTAGGAGAAGGTGTGATGCCTGCAAGTTTCAAGGTG 685
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 492 GAGAAACGTGTGGACCGGTTCAAGTTAGGAGAAGGTGTGATGCCTGCAAGTTTCAAGGTG 551
Query 686 CTTCATGATCCTATCCGTGAAACGGATAACATTGTTGCGGATTTCGGTGAGAGTGCTATT 745
|||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct 552 CTTCATGATCCTATTCGTGAAACGGATAATATTGTTGCGGATTTCGGTGAAAGTGCCATT 611
Query 746 GGACGTGTGGCTCCTGTAGATTCAGGGTTCTGGTGGATTATTCTTCTTCGTGCTTATACC 805
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 612 GGACGTGTGGCTCCTGTAGATTCAGGGTTCTGGTGGATTATCCTTCTTCGTGCTTATACC 671
Query 806 AAATCTACTGGAGATTTGACTCTCTCTGAGACACCAGAGTGTCAAAAGGGAATGAAACTG 865
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 672 AAATCTACTGGAGATTTGACTCTCTCGGAGACGCCAGAGTGTCAAAAGGGAATGAAACTG 731
Query 866 AT-CTTGTCTTTGTGCTTAGCTGAAGGGTTTGACACGTTTCCTACACTGCTTTGTGCTGA 924
|| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 732 ATCCTT-TCTTTGTGCTTAGCTGAAGGGTTTGACACGTTTCCTACGCTGCTTTGTGCTGA 790
Query 925 TGGATGTTCCATGATTGATCGAAGAATGGGTGTTTATGGGTATCCCATTGAGATCCAAGC 984
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 791 TGGATGTTCCATGATTGATCGAAGAATGGGTGTTTATGGGTATCCAATTGAGATCCAAGC 850
Query 985 GTTGTTCTTCATGGCTTTGAGATCTGCTTTGTCGATGTTAAAGCCCGATGGAGATGGCAG 1044
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 851 GTTGTTCTTCATGGCTCTGAGATCTGCCTTGTCGATGTTAAAGCCCGATGGAGATGGCAG 910
Query 1045 AGAGGT-CATTGAGAGGATCGTTAAGCGACTTCATGCCTTGAGCTTCCATATGCGCAATT 1103
||| || |||||||| |||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 911 AGA-GTGCATTGAGAAGATCGTTAAGCGGCTTCACGCCTTGAGCTTCCATATGCGCAATT 969
Query 1104 ACTTCTGGCTTGATCATCAGAACCTCAATGACATTTACAGGTTCAAGACTGAGGAATACT 1163
|||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| |
Sbjct 970 ACTTCTGGCTCGATCACCAGAACCTCAATGACATTTACAGGTTCAAGACCGAGGAATATT 1029
Query 1164 CTCACACGGCGGTGAACAAGTTCAATGTGATGCCTGATTCTATACCCGAGTGGGTTTTCG 1223
| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1030 CGCACACGGCAGTGAACAAGTTCAATGTGATGCCTGATTCTATACCGGAGTGGGTTTTCG 1089
Query 1224 ACTTCATGCCTCTCCGTGGAGGCTACTTTGTGGGAAACGTAGGACCTGCCCATATGGATT 1283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1090 ACTTCATGCCTCTCCGTGGAGGCTACTTTGTGGGAAACGTAGGACCTGCCCATATGGATT 1149
Query 1284 TCCGGTGGTTCGCACTCGGTAATTGTGTCTCCATACTTTCTTCATTGGCCACTCCAGATC 1343
|||||||||| || || || ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1150 TCCGGTGGTTTGCGCTTGGCAATTGTGTCTCCATACTCTCTTCATTGGCCACTCCAGATC 1209
Query 1344 AATCCATGGCCATTATGGACCTCCTTGAGCACCGGTGGGCAGAGCTTGTAGGTGAGATGC 1403
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1210 AATCCATGGCCATTATGGACCTCCTTGAGCACCGGTGGGCGGAGCTTGTAGGTGAGATGC 1269
Query 1404 CTCTCAAGATTTGTTATCCATGCCTCGAGGGCCATGAGTGGCGCATCGTTACTGGCTGTG 1463
| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1270 CCCTCAAGATTTGTTATCCATGCCTCGAGGGCCACGAGTGGCGCATCGTCACTGGCTGTG 1329
Query 1464 ACCCCAAGAACACACGGTGGAGCTACCACAATGGTGGATCTTGGCCAGTTTTGCTGTGGC 1523
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1330 ACCCCAAGAACACACGGTGGAGCTACCACAACGGTGGATCTTGGCCAGTTTTGCTATGGC 1389
Query 1524 AGCTAACAGCAGCGTGCATTAAGACAGGGAGACCGCAGATCGCAAGACGCGCGGTTGACC 1583
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 1390 AGCTAACAGCAGCGTGCGTTAAGACAGGGAGACCGCAGATCGCAAGACGCGCAGTTGACC 1449
Query 1584 TCATAGAATCGCGTCTTCACCGAGACTGTTGGCCAGAGTATTACGACGGTAAGCTCGGAA 1643
|||||||||||||||||||| | ||||||||||||||||||||||| |||||||| ||||
Sbjct 1450 TCATAGAATCGCGTCTTCACAGGGACTGTTGGCCAGAGTATTACGATGGTAAGCTAGGAA 1509
Query 1644 GGTACGTTGGAAAACAGGCAAGGAAATACCAGACTTGGTCAATCGCAGGTTACTTAGTGG 1703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1510 GGTACGTTGGAAAACAGGCAAGGAAATACCAGACTTGGTCAATCGCAGGTTACTTAGTGG 1569
Query 1704 CGAAAATGTTGCTAGAAGATCCTTCACACATTGGTATGATCTCTCTTGAAGAAGACAAAC 1763
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1570 CAAAAATGTTGCTAGAAGATCCTTCACACATTGGTATGATCTCTCTTGAAGAAGACAAAC 1629
Query 1764 TCATGAAACCAGTCATCAAGCGATCTGCGTCTTGGCCACAACTCTGAAAAACCGCTTTAG 1823
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||| || |
Sbjct 1630 TCATGAAACCAGTCATCAAGCGATCTGCATCTTGGCCACAACTCTGAAAA-CCGCCTTCG 1688
Query 1824 GTTTTTGTTC 1833
||||||||||
Sbjct 1689 GTTTTTGTTC 1698
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77704099800
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5