BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G35614.1

Length=342
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg315648 jgi|Araly1|315648|fgenesh1_pm.C_scaffold_2000681           126    9e-29
  Ahg942371 jgi|Araly1|942371|scaffold_602915.1                        119    1e-26
  Ahg927036 jgi|Araly1|927036|scaffold_202597.1                        119    1e-26
  Ahg916613 jgi|Araly1|916613|Al_scaffold_0008_1364                   75.0    3e-13


> Ahg315648 jgi|Araly1|315648|fgenesh1_pm.C_scaffold_2000681
Length=339

 Score =  126 bits (68),  Expect = 9e-29
 Identities = 85/93 (91%), Gaps = 2/93 (2%)
 Strand=Plus/Plus

Query  172  ACCCAAAAGATA-GATCCGCCGTGCGCCGTCTACGTCTCCACCGGACATGGCGCATCTGA  230
            ||||| |||| | || ||||||||||||||| ||| ||||| ||||||||||||||||||
Sbjct  103  ACCCAGAAGA-AGGAACCGCCGTGCGCCGTCGACGACTCCAACGGACATGGCGCATCTGA  161

Query  231  CGGTCCAAGAGTGAGTTCTCCTGCCATCAACGA  263
            ||||||||||| |||||||||||||||||||||
Sbjct  162  CGGTCCAAGAGGGAGTTCTCCTGCCATCAACGA  194


> Ahg942371 jgi|Araly1|942371|scaffold_602915.1
Length=1399

 Score =  119 bits (64),  Expect = 1e-26
 Identities = 85/95 (89%), Gaps = 2/95 (2%)
 Strand=Plus/Minus

Query  170  CCACCCAAAAGATAGATCCGCCGTGCGCCGTCTACGTCTCCACCGGACATGGCGCATCTG  229
            ||||||| ||||||||| |||||||||||||| ||| |||||||||||||||||||||||
Sbjct  321  CCACCCAGAAGATAGATTCGCCGTGCGCCGTCGACGACTCCACCGGACATGGCGCATCTG  262

Query  230  ACGGTCCAAGAGTG-AGTTCTCCTGCCATCAACGA  263
            |||||||||||| | |   ||| ||||||||||||
Sbjct  261  ACGGTCCAAGAGAGGAAA-CTCTTGCCATCAACGA  228


> Ahg927036 jgi|Araly1|927036|scaffold_202597.1
Length=1273

 Score =  119 bits (64),  Expect = 1e-26
 Identities = 85/95 (89%), Gaps = 2/95 (2%)
 Strand=Plus/Minus

Query  170  CCACCCAAAAGATAGATCCGCCGTGCGCCGTCTACGTCTCCACCGGACATGGCGCATCTG  229
            ||||||| ||||||||| |||||||||||||| ||||||||| |||||||||||||||||
Sbjct  195  CCACCCAGAAGATAGATTCGCCGTGCGCCGTCGACGTCTCCATCGGACATGGCGCATCTG  136

Query  230  ACGGTCCAAGAGTG-AGTTCTCCTGCCATCAACGA  263
            |||||||||||| | |   ||| ||||||||||||
Sbjct  135  ACGGTCCAAGAGAGGAAA-CTCTTGCCATCAACGA  102


> Ahg916613 jgi|Araly1|916613|Al_scaffold_0008_1364
Length=360

 Score = 75.0 bits (40),  Expect = 3e-13
 Identities = 42/43 (98%), Gaps = 0/43 (0%)
 Strand=Plus/Plus

Query  188  CGCCGTGCGCCGTCTACGTCTCCACCGGACATGGCGCATCTGA  230
            |||||||||||||| ||||||||||||||||||||||||||||
Sbjct  140  CGCCGTGCGCCGTCGACGTCTCCACCGGACATGGCGCATCTGA  182



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12133477302


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5