BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G35620.1
Length=1646
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473690 jgi|Araly1|473690|fgenesh2_kg.1__3644__AT1G35620.1 2333 0.0
> Ahg473690 jgi|Araly1|473690|fgenesh2_kg.1__3644__AT1G35620.1
Length=1607
Score = 2333 bits (1263), Expect = 0.0
Identities = 1477/1581 (93%), Gaps = 11/1581 (1%)
Strand=Plus/Plus
Query 73 AGTTTGTTACACAGTCTTGTAGTATCAGAAACCTTCTTAAGTTTGGTCTG-AAAATCAGA 131
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||
Sbjct 31 AGTTTGTTACACAGTCTTGTAGTATCAGAAACCTTTTTAAGTTTGGTCTGAAAAATTAGA 90
Query 132 TCGAGATGCGTTCGTTAAAGTTACTCCTTTGTTGGATCTCGTTTCTTACGTTATCAATCT 191
||||||||||||||||| |||| | || |||||||||||||||||||||||||||||||
Sbjct 91 TCGAGATGCGTTCGTTAGGGTTAATACTCTGTTGGATCTCGTTTCTTACGTTATCAATCT 150
Query 192 CAATCTCTGCATCGTCAGATGATCAATTCACCCTCGACGGAACAGTTTTAGAACTCACCG 251
||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 151 CAATCCCTGCATCGTCTGATGATCAATTCACCGTCGACGGAACAGTTTTAGAACTCACCG 210
Query 252 ATTCGAATTTCGACTCGGCGATTTCAACTTTCGATTGCATCTTTGTTGATTTCTATGCTC 311
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 211 ATTCGAATTTTGATTCGGCGATTTCAACTTTCGATTGCATCTTTGTTGATTTCTATGCTC 270
Query 312 CTTGGTGTGGTCACTGCAAGCGTCTCAATCCCGAGTTAGACGCAGCTGCTCCAATTCTTG 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 271 CTTGGTGTGGTCACTGCAAGCGTCTCAATCCCGAGTTAGACGCAGCTGCTCCAATTCTTG 330
Query 372 CTAAATTGAAGCAGCCTATTGTGATTGCAAAGCTGAATGCTGATAAGTATTCTCGTCTCG 431
||||||||||||||||||| | ||||| ||||||||||||||||||||||| |||||||
Sbjct 331 CTAAATTGAAGCAGCCTATCATTATTGCGAAGCTGAATGCTGATAAGTATTCGCGTCTCG 390
Query 432 CTCGGAAGATTGAGATTGATGCATTTCCGACTCTCATGCTTTATAACCATGGAGTTCCAA 491
| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 391 CACGGAAGATTGAGATTGATGCATTCCCGACTCTCATGCTCTATAACCATGGAGTTCCAA 450
Query 492 TGGAGTACTATGGACCAAGGAAAGCAGATTTGCTTGTGCGTTACTTGAAGAAGTTTGTTG 551
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 451 TGGAGTACTATGGACCGAGGAAAGCAGATTTGCTTGTTCGTTACTTGAAGAAGTTTGTTG 510
Query 552 CTCCAGATGTTGCGGTTCTTGAGTCAGACTCAACTGTCAAGGAGTTTGTTGAAGATGCTG 611
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 511 CTCCAGATGTTGCGGTTCTTGAGTCAGACTCAGCTGTCAAGGAGTTTGTTGAAGATGCTG 570
Query 612 GGACATTCTTCCCTGTGTTTATCGGGTTTGGTTTGAACGAATCGATAATATCAGGATTAG 671
|||| |||||||| |||||||||||||||||||||||||||||| | ||||||| ||||
Sbjct 571 GGACTTTCTTCCCGGTGTTTATCGGGTTTGGTTTGAACGAATCGTTGATATCAGTCTTAG 630
Query 672 GTCGGAAGTATAAGAAGAAGGCATGGTTTGCTGTTTCAAAGGAAGTTTCAGAGGATACTA 731
|| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
Sbjct 631 GTGGGAAGTATAAGAAGAAGGCATGGTTTGCTGTTGCAAAGGATGTTTCAGAGGATACAA 690
Query 732 TGGTTTCTTATGATTTTGATAAGGCTCCTGCATTAGTTGCCAATCATCCAACTTACAATG 791
||||||||||||||||||||||||||||||||||||| ||||| ||||| || |||||||
Sbjct 691 TGGTTTCTTATGATTTTGATAAGGCTCCTGCATTAGTAGCCAAACATCCTACGTACAATG 750
Query 792 AGCATAGCGTGTTTTACGGGCCATTCGAAGATGGATTCTTGGAGGAATTTGTGAAACAGA 851
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 751 AGCATAGCGTCTTTTACGGGCCATTCGAAGATGGATTCTTGGAGGAATTTGTGAATCAGA 810
Query 852 GTTTTCTTCCTTTGATTCTACCTATTAACCATGACACAT-TGAAGTTGTTGAAGGACGAT 910
|||| |||||| ||||||| ||||| ||||| ||||| | ||||| || |||||||||||
Sbjct 811 GTTTCCTTCCTCTGATTCTGCCTATAAACCAGGACAC-TCTGAAGCTGCTGAAGGACGAT 869
Query 911 GAGAGAAAGATTGTCTTGACGATCGTGGAAGATGAAACACACGAAAGCTTGGAGAAACTA 970
|||||||||||||||||||| || |||||||||||||| |||||||||||||| ||||||
Sbjct 870 GAGAGAAAGATTGTCTTGACAATTGTGGAAGATGAAACTCACGAAAGCTTGGATAAACTA 929
Query 971 -TACAAAGCATTGAGAGCAGCTGCTCATGCGAACCGCGACCTCGTTTTTGGCTACGTCGG 1029
| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 930 AT-CAAAGCACTGAGAGCAGCTGCTCATGCGAACCGCGACCTTGTTTTTGGCTACGTCGG 988
Query 1030 TGTGAAGCAGTTTGAAGAGTTTGTTGACTCGTTTCATGTAGACAAGAAGACAAATCTGCC 1089
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 989 TGTGAAGCAGTTTGAAGAGTTTGTAGACTCGTTTCATGTAGACAAGAAGACAAATCTTCC 1048
Query 1090 TAAGATTGTTGTGTGGGATGGAGATGAAGAGTATGATCAGGTGACGGGTATAGAGACCAT 1149
|||||||||||||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct 1049 TAAGATTGTTGTGTGGGATGGAGATGAAGAGTATGATCAGGTTACCGGCATAGAGACCAT 1108
Query 1150 AACCCAAGAGGAAGATCATTTGACCCAAGTGTCTCGGTTTCTAGAGGGCTATAGAGAAGG 1209
| ||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||
Sbjct 1109 TAGCCAAGAGGAAGATCATTTGACTCAAGTGTCCCGGTTTCTAGAGGGATATAGAGAAGG 1168
Query 1210 AAGAACAGAGAAGAAGAAAATCAACGGACCATCGTTCATGGGATTTATCAACTCAATGAT 1269
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1169 AAGAACAGAGAAGAAGAAAATCAACGGACCATCTTTCATGGGATTTATCAACTCAATGAT 1228
Query 1270 TGGGATTAGGTCAGTGTACATCCTTGTGTTCTTGGTTGCGGTCATTATGATGCTACGGAG 1329
||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 1229 CGGGATTAGGTCAGTGTACATCATTGTGTTCTTGGTTGCTGTCATTATGATGCTACGGAG 1288
Query 1330 CCTCGGTCAAGTTGAGGAGCCTACTGGAGTCCGGACCGCCACAGCAGTCC-GTGAAAGAG 1388
|||||||||||| ||||||||| |||||||| |||| ||| ||||| ||| | |||||||
Sbjct 1289 CCTCGGTCAAGTGGAGGAGCCTGCTGGAGTCAGGACTGCCCCAGCA-TCCCGCGAAAGAG 1347
Query 1389 TTGATCAGGCCACTACTGTCCCTGAAGATGAAAGCAGTGAGCATAAGCCTAGTGACAAAA 1448
|||||||| |||||| |||| |||||| ||||| |||||||||||||| |||||||||||
Sbjct 1348 TTGATCAGACCACTAGTGTCACTGAAGGTGAAACCAGTGAGCATAAGCTTAGTGACAAAA 1407
Query 1449 AAGAGGACTAG-TTTT--GTTACACTTGAATGTGGTATGttttttttCTTCTTTTATACT 1505
||||||||||| |||| | |||||||||||||||||||||||||||||||||||| |||
Sbjct 1408 AAGAGGACTAGCTTTTTAGCTACACTTGAATGTGGTATGTTTTTTTTCTTCTTTTACACT 1467
Query 1506 TGAAGCTAACTTATATAGTTCATGCTTATTTATCTTCTTTATGGTTAGTCTTTTTGGGTT 1565
|||||||||||||||||||||||| || | |||||||||||||| ||||||||||| |||
Sbjct 1468 TGAAGCTAACTTATATAGTTCATGGTTGTCTATCTTCTTTATGGCTAGTCTTTTTGAGTT 1527
Query 1566 TTAAACGGATGGTTGTTCCATTTTATTTATGAATCATTTTGGCTCTCTAGTTGCATATCT 1625
|||||| || | |||||||| |||||||||||||| ||||||||||||| | ||||||||
Sbjct 1528 TTAAACCGACGATTGTTCCAATTTATTTATGAATCCTTTTGGCTCTCTAAT-GCATATCT 1586
Query 1626 TTGGGATGTAATGAGGTACTT 1646
||||||| ||||||||||||
Sbjct 1587 TTGGGATCCAATGAGGTACTT 1607
Score = 60.2 bits (32), Expect = 5e-08
Identities = 32/32 (100%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 23 TTCTCCTAAAGTAACGTAAGACTTATCAGAAG 54
||||||||||||||||||||||||||||||||
Sbjct 1 TTCTCCTAAAGTAACGTAAGACTTATCAGAAG 32
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61706196900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5