BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G35630.1
Length=1060
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913428 jgi|Araly1|913428|Al_scaffold_0001_3682 1203 0.0
> Ahg913428 jgi|Araly1|913428|Al_scaffold_0001_3682
Length=957
Score = 1203 bits (651), Expect = 0.0
Identities = 870/972 (90%), Gaps = 30/972 (3%)
Strand=Plus/Plus
Query 29 ATGAACTATA-GTTGGATTACAATCATGTCTCTGTTGGTAATTTGTAAGCTGGCTTCGGC 87
||||| | || ||| |||||||||||||| |||||||||||||| | |||||||||||||
Sbjct 1 ATGAATTGTAGGTT-GATTACAATCATGTTTCTGTTGGTAATTTCTCAGCTGGCTTCGGC 59
Query 88 GAAAGTAGTGTTGATCGGGAAAAACACAATTCTATCCTTTG-ATGATGTCGAGGCAACTT 146
|||||||||||||||||| ||||||||||||| ||||||| || ||||||| || ||||
Sbjct 60 CAAAGTAGTGTTGATCGGGGAAAACACAATTCTCTCCTTTGAAT-ATGTCGAAGCGACTT 118
Query 147 TCACTCCAATTGTTAGAA-ACTCGGGGGAATGTGGAAT-TTTGTACGTTGCAGAGCCTCT 204
|||||||||||||||||| | |||||||||| ||| || || |||| ||||||||||||
Sbjct 119 TCACTCCAATTGTTAGAAGA-TCGGGGGAATATGG-ATCATTATACGCTGCAGAGCCTCT 176
Query 205 TGAGGCATGCTCGGATATAACCAACATGGCGGAAAAAAGATCAAAGTATAGGTCCTCTTA 264
||| || ||||||||| ||| |||| ||||||||||| |||||| || ||||||||||||
Sbjct 177 TGATGCGTGCTCGGATTTAAACAACCTGGCGGAAAAAGGATCAAGGTTTAGGTCCTCTTA 236
Query 265 TGTATTGATCGTCCTTGGTGGCTGTAGTTTTGAGGAAAAGGTTAGAAAGGCGCAGAAAGC 324
|||||||||||| | |||||| ||||||||||||||||| |||| ||| || ||||||||
Sbjct 237 TGTATTGATCGTTCGTGGTGGATGTAGTTTTGAGGAAAAAGTTATAAAAGCACAGAAAGC 296
Query 325 TGGATACAAAGCTGCGATTGTCTATAACGATGGATATGATGAGCTCTTAGTACCTATGGC 384
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 297 TGGATACAAAGCTGCGATTGTCTATAACAATGGATATGATGAGCTCTTAGTACC--T--- 351
Query 385 AGGAAATTCATCTGGTGTGGATATACATGGCTTGCTTGTTACAAGAGCATCAGGGGAGGT 444
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 352 A-GAAATTCATCTGGTGTGCATATACATGGCTTGCTTGTTACAAGAGCATCAGGGGAGGT 410
Query 445 GCTTAAAGGGTACGCGGATCAAGA-C-GAGATGAAGCTTTGGCTCATCCCGGGATTCGGG 502
||||||||||| ||| | | || | |||||| ||||||||||||||||||||||||||
Sbjct 411 ACTTAAAGGGTATTCGGGT-A-GATCCGAGATGGAGCTTTGGCTCATCCCGGGATTCGGG 468
Query 503 ATTTCATCT-TGGTCCATCATGGGTATTACATTCATATCTTTACTCGCCATGTCTGCTAT 561
|||||| || ||||||||||||||||| || |||||||||||||||||| |||||||| |
Sbjct 469 ATTTCA-CTGTGGTCCATCATGGGTATCACTTTCATATCTTTACTCGCCGTGTCTGCTGT 527
Query 562 TCTAGCCACTTGTTTCGTTGTCCGTAGGCATCAAATTAGACAGAGTGTGAGGGATTTACC 621
||||||||||||||||||| ||| || ||||| |||||||| |||||||||||||||||
Sbjct 528 TCTAGCCACTTGTTTCGTTTTCCATATGCATCGAATTAGACGGAGTGTGAGGGATTTACA 587
Query 622 ---AC---ATGGTGGCCAAGGACTTTCTTGTATGCCAAGAGACTTGTTGCAAAGCATGCC 675
|| |||||||||||||||||||| ||||||| ||| | |||||||||||||||||
Sbjct 588 TTTACCCTATGGTGGCCAAGGACTTTCTCGTATGCCTAGAAAATTGTTGCAAAGCATGCC 647
Query 676 GACTGAAGTATATAGCGGTGTTCTTGAAGAAAGTTCAACTTCGGTTACTTGTGCTATATG 735
||||||| |||||| |||||||||||||||| |||| ||||||||||||||||| |||||
Sbjct 648 GACTGAACTATATACCGGTGTTCTTGAAGAAGGTTCGACTTCGGTTACTTGTGCAATATG 707
Query 736 TATCGATGATTATTGCGTTGGTGAAAAACTCC-GAATCCTACCTTGCAAACACAAATATC 794
|| ||||||||||||||||||||||||||| || ||||||||||||||||||||| ||
Sbjct 708 CATTGATGATTATTGCGTTGGTGAAAAACTCAAGA-TCCTACCTTGCAAACACAAATTTC 766
Query 795 ATGCGGTGTGTATCGATTCTTGGCTCGGACGTTGTAGATCCTTTTGTCCGGTTTGTAAAC 854
||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 767 ATGTGGTGTGTATCGATTCTTGGCTCGGACATTGGAGATCCTTTTGTCCGGTTTGTAAAC 826
Query 855 AAAAT-CCAAGAACAGGAAATGATGTTCCACCAGCATCAGAAACAACACCTCTGATTTCT 913
| | |||||||||||||||| |||||||||||| |||| ||||||||||||| |||||
Sbjct 827 GCA-TGCCAAGAACAGGAAATGGTGTTCCACCAGCGTCAGCAACAACACCTCTGCTTTCT 885
Query 914 CCTAGCCCGAACTCTATTACTTCACTACAATCGTTTTATGATCTACCAATAGTTGTCAGA 973
|||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||| |
Sbjct 886 CCTAGCCCAAACTCTATTACTTCACTACAATCGTTTTATGATCTACCAATTGCTGTCAAA 945
Query 974 GTATATCTGTAA 985
||||||||||||
Sbjct 946 GTATATCTGTAA 957
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39457219095
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5