BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G35660.1
Length=4447
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473691 jgi|Araly1|473691|fgenesh2_kg.1__3645__AT1G35660.1 3306 0.0
> Ahg473691 jgi|Araly1|473691|fgenesh2_kg.1__3645__AT1G35660.1
Length=3446
Score = 3306 bits (1790), Expect = 0.0
Identities = 2173/2352 (92%), Gaps = 49/2352 (2%)
Strand=Plus/Plus
Query 1584 GGTTGTACGGGCATATGCACACGAGCAGTTCGCAAGATTAATTCTGAATAGTGACGAGGA 1643
|||||||||||||||||||||||||||||| ||||| | ||| |||||| |||||||||
Sbjct 1116 GGTTGTACGGGCATATGCACACGAGCAGTTTGCAAGGCTCATTTTGAATAATGACGAGGA 1175
Query 1644 ATCTGATTTGACTTTTGAGTCTAATGGTGTGCAACGTGAAGTCAAAATAACGGACCTAGA 1703
|| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1176 ATTTGATTTGAGTTTTGAGTCTAATGGTGTGCAACGTGAAGTCAAAATAACAGACCTAGA 1235
Query 1704 GGAGGAAGCACTTGATCCTGTTACTATTGCTGACCATGAAAATGAGACCGTGACTTTCTC 1763
||| ||| ||||||||||||||||||||| |||||||||||||||| |||||| ||| ||
Sbjct 1236 GGAAGAATCACTTGATCCTGTTACTATTGTTGACCATGAAAATGAGGCCGTGATTTTATC 1295
Query 1764 AGAAGACAAGTTCACTGAAGATCACTCAGTTTCTAATA---T---TGTGCCTTTAGTGTC 1817
||| |||||||||||||||||||||||| | ||||||| | |||||||||| ||||
Sbjct 1296 AGAGGACAAGTTCACTGAAGATCACTCAATCTCTAATATTGTGCCTGTGCCTTTACTGTC 1355
Query 1818 TGTTCGACCAAAGTTGGAAGCAAATGTGTCACTTTGCAAGGAACTCTTACATTCAGATAG 1877
|||| |||||||||||||||||||| |||||| ||||||||||||||| |||||||||||
Sbjct 1356 TGTTAGACCAAAGTTGGAAGCAAATTTGTCACCTTGCAAGGAACTCTTTCATTCAGATAG 1415
Query 1878 TCCAGATTCCCATGATACTGAAGGCTCTGCAGTGAACTCCAGTTCAGATACTAGTCTCGA 1937
|||||||||||| ||||||||| |||||| ||||||||||||||||||||||||| ||||
Sbjct 1416 TCCAGATTCCCACGATACTGAAAGCTCTGTAGTGAACTCCAGTTCAGATACTAGTTTCGA 1475
Query 1938 TCTTGGTACATTATGCCAAACTACAACTAGTCCTATCTCATCGAAACTATCAGCAATAAA 1997
||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 1476 TCTTGGTACGGTATGCCAAACTACAACTAGTCCGATCTCATCGAAACTATCAGCAGTAAA 1535
Query 1998 CCATGTTTCTCAAGCTATAAAGTCTCTGAGGTGGACACGGCAACTACAATCTTCAGAACA 2057
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1536 CCATGTTTCTCAAGCTATAAAGTCTCTGAGGTGGACACGGCAACTACAATCTTCAGAACA 1595
Query 2058 GGTGGATGCATTTCATGATATCTTACCTGATTTTTCCAAGTGTTCATGTGGTGATCCTGA 2117
|| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 1596 GGAGGATGCATTTCATGATATCTTACCTGATTTTTCCAAATGTGCATGTGGTGATCCTGA 1655
Query 2118 TTGTATTGAGGTCTGTGATATCCGTAAGTGGCTACCAACATCTAAACTAGATAGGAAATT 2177
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1656 TTGTATTGAGGTCTGTGATATCCGTAAGTGGCTACCAACATCTAAACTAGACAGGAAATT 1715
Query 2178 GTGGAACCTCGTTTTACTTCTCGGTGAATCATATTTGTCTCTAGGGGAAGCTTACAAAGA 2237
||||||||| ||| | ||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 1716 GTGGAACCTTGTTCTGCTTCTTGGTGAATCATATCTGTCTCTAGGGGAAGCTTACAAAGA 1775
Query 2238 GGATAAACAGTTGCACCAAGCGTTGA-ATACTGTGGAATTAGCTTGCTCGATTTATGGAT 2296
|||| ||||||||||||||| || | ||||||||||||||||||||||| |||||||||
Sbjct 1776 GGATGGACAGTTGCACCAAGC-TTTACATACTGTGGAATTAGCTTGCTCGTTTTATGGAT 1834
Query 2297 CAATGCCACAGAAGTTTGAGGAGACATTGTTTGTTTCCTCGATGAACAAGTCTCTTTCAC 2356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1835 CAATGCCACAGAAGTTTGAGGAGACATTGTTTGTTTCCTCGATGAACAAGTCTCTTTCAC 1894
Query 2357 TGCAGTCAAAATTTCATGAAAGAACGCAAGTGGAAGATTTAGAAGCAAAATCAGGGCCAT 2416
||| |||||||| |||| || | | || | || || | || || |||| | |
Sbjct 1895 TGCGGTCAAAATCGCATGCAA-A-CTCA-G-GGCC-ATGT-GA--CA---TCAGTG---T 1940
Query 2417 CTGACATCAGTGTTGAAGAACTTTCATCAACACGCCTCTTCTGGGCTAAAGTATGGATGT 2476
|| | | ||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1941 -TG------G-G--GAA---CTATCATCAACACGCCTCTTCTGGGCTAAAGTATGGATGT 1987
Query 2477 TGGTTGGCGACATATATGTTCAGTTCCACATTCTTAAAGGTCAGGAGCTTTCCAGAAGAA 2536
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||
Sbjct 1988 TGGTTGGCGACATATATGTCCAGTTCCACATTCTTAAAGGTCAGGAGCTCTCCAGAAAAA 2047
Query 2537 CAAAGGGGACA--A-CCAATCATTTAAAAATGC-AGTCTGAAGTAGTAAAGGAAGTACAG 2592
||||||||||| | |||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 2048 CAAAGGGGACATCAACCAATCATTTAAAAATGCCA-TCTGAAGTAGTAAAGGAAGTACAG 2106
Query 2593 CGGCTCAAAAAGAAGTTAACTGAGTATAGTCAAAATTGTGCCTCGTGTTCATTAGTAAAT 2652
|| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2107 CGCCTCAAGAAGAAGTTAACTGAGTATAGTCAAAATTGTGCCTCATGTTCATTAGTAAAT 2166
Query 2653 TGCAGCTGTAAAAGTGACAGAGCAAGCAGTGGAAGCAGTGCAAGTAGCAGCAATGGAAGT 2712
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2167 TGCAGCTGTAAAAGTGACAGAGCAAGCAGTGGAAGCAGCGCAAGTAGCAGCAATGGAAGT 2226
Query 2713 AGTGCTCGTACTGTGCCTCATAGCAGGAAGCACAATAGAAAATTACAGTCCAAAAATGTC 2772
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2227 AGTTCTCGTACTGTGCCTCATAGCAGGAAGCACAATAGAAAATTACAGTCCAAGAATGTC 2286
Query 2773 GCCAGCAAGGTCTCACGAGATGTTGAAGATGAACGTGTTAATTTTAAAGTTGAGAACAAG 2832
||||||| |||||||||| ||||||||||||||| ||||||||| |||||||||||||||
Sbjct 2287 GCCAGCAGGGTCTCACGAAATGTTGAAGATGAACATGTTAATTTCAAAGTTGAGAACAAG 2346
Query 2833 AGCCGTAAAGAAGAAGAAGACACATCGGGTGAGACAAAAGGAGCTGTCCGTCTGGAGCAG 2892
|||| |||||||||||| |||| ||||| || ||||||| |||||||| ||||||||||
Sbjct 2347 AGCCATAAAGAAGAAGA-GACA--TCGGGGGAAACAAAAGAAGCTGTCCCTCTGGAGCAG 2403
Query 2893 AATGAATCTAACTCTAAGGAAACTCCAGGAGCGAAAAAAGG-TGGAATATTCAAATATCT 2951
|||||||| |||||||||||||| |||||||| |||||||| ||||||||||||||||||
Sbjct 2404 AATGAATCGAACTCTAAGGAAACCCCAGGAGC-AAAAAAGGGTGGAATATTCAAATATCT 2462
Query 2952 CAAGGGGTCTAAAACTGATGATGCAGAAAGCAATCTGTTGGCTGCCTTAAATTGTTATGA 3011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2463 CAAGGGGTCTAAAACTGATGATGCAGAAAGCAATCTGTTGGCTGCCTTAAATTGTTATGA 2522
Query 3012 GGAAACACGAAGAGCATTACAGGAGCTTCCAAGCAACTGTAGTGAGTTTCAGTCTGTT-T 3070
|||||| ||||||||||||||||||||||||||| ||||| |||||| ||||||||| |
Sbjct 2523 GGAAACTCGAAGAGCATTACAGGAGCTTCCAAGCGGCTGTAATGAGTTGCAGTCTGTTCT 2582
Query 3071 TGAGAAAGAAAGGGTGGGTATGTAATGAACTTGGTCGGAACCGTCTCGGGAGCAAAGAGC 3130
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2583 T-AGAAAGAAAGGGTGGGTATGTAATGAACTTGGTCGGAACCGTCTAGGGAGCAAAGAGC 2641
Query 3131 TCAACAAAGCTGAAGACGCCTTTGCTGATGCTATAGTGGCATTCAAGGAAGTTTGCGATC 3190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2642 TCAACAAAGCTGAAGACGCCTTTGCTGATGCTATAGTGGCATTCAAGGAAGTTTGCGATC 2701
Query 3191 ATACTAATGTCATACTCATCAACTGCAACTTGGGTCACGGGCGACGAGCTCTAGCTGAAG 3250
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2702 ATACTAATGTCATACTAATCAACTGCAACTTGGGTCACGGGCGACGAGCTCTGGCTGAAG 2761
Query 3251 AAATGGTTCCAAAGATCGAAGCTCTCGAACTGCATCGTGCTTTTGAAAATGCTTACCAAA 3310
|||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||
Sbjct 2762 AAATGGTTCCAAAGATCGAAGCTCTCAAACTGCATCCTGCGTTTGAAAATGCTTACCAAC 2821
Query 3311 AAGCTCTGGGGACTGCAAAACTTGAATACAGCAAGTCACTTAGGTATTACATGGCAGCAA 3370
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2822 AAGCTCTGGGGACTGCGAAACTTGAATACAGCAAGTCACTTAGGTATTACATGGCAGCAA 2881
Query 3371 AGACAGAACTCAGTGTTGCCACTGCAGAAGCTAG-TTCAGTTTCAGACAATTTGAAAGTT 3429
||||||||||||| || || |||| ||||||||| || ||| |||||||| ||||||||
Sbjct 2882 AGACAGAACTCAGGGTGGCTACTGAAGAAGCTAGATTG-GTTCCAGACAATCTGAAAGTT 2940
Query 3430 GAAGTCTACACACAGCTTGCCAATACCTATCTCAGATTTGGAATGCTTTTAGCAAATGAA 3489
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2941 GAAGTTTACACACAGCTTGGCAATACCTATCTCAGATTTGGAATGCTTTTAGCAAATGAA 3000
Query 3490 GATACAACCGCTGCAGCTCGTGAACAGAAGAACATCTTGGAAAACACTCATGATTCTTCT 3549
||| ||||||||||||||| || |||||||| |||||||||||| ||||||||||| |||
Sbjct 3001 GATTCAACCGCTGCAGCTCATGGACAGAAGAGCATCTTGGAAAAGACTCATGATTCGTCT 3060
Query 3550 TCTGATGGAAAATCCAGCGACTTGAGAAAACGTGAAGTATTATCAGCCAGTGACGCTATA 3609
||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||
Sbjct 3061 TCTGATGGAAAATCCAGCGACTTGAGAAATCATGAAGTATTATCAGCTAGTGACGCTATA 3120
Query 3610 AGAGAGGCGTTGGCTCTATATGAATCTCTCGGAGAAATACGCAAACAAGAAGCTGCATTC 3669
||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||| |
Sbjct 3121 CGAGAGGCATTGGCTCTATATGAATCTCTCGGGGAAATACGCAAACAAGAAGCCGCATAC 3180
Query 3670 GCTTACCTTCAACTAGCACGGTATCACAAAGACTGCTGCTTGGGATTTCTGGAGACAGAG 3729
||||||||| | ||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 3181 GCTTACCTTGAGTTAGCACGGTATCACAAAGATTGCTGCTTGGGATTTCTGAAGACAGAG 3240
Query 3730 CGTCAAGGAAGTCCTCGTAAACCCGAGAGTAATGTCATTCAGAGAGCCAAACAGTATGCT 3789
||||||||||||||| |||||| |||| |||||||||||||||||||||||| ||||||
Sbjct 3241 TGTCAAGGAAGTCCTCTTAAACCGGAGACTAATGTCATTCAGAGAGCCAAACAATATGCT 3300
Query 3790 TTGTTGGCAGATAGGAATTGGCAGAAATCGATGGATTTCTACGGTCCTGAGAATCTTCCT 3849
||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||
Sbjct 3301 TTGTTGGCAGATAGGAATTGGCAGAAATCAATGGATTTTTATGGTCCTGAGAATCTTCCT 3360
Query 3850 TCGATGTTCCTTACGATCCTAATTGAGAGATCAGCTCTTTCCTCAACCGTTTCAAACTTC 3909
|| |||||||| |||||||| | |||||||||||||||||||| || ||||||||| |||
Sbjct 3361 TCCATGTTCCTGACGATCCTGACTGAGAGATCAGCTCTTTCCTTAAGCGTTTCAAATTTC 3420
Query 3910 TGGCAATTAAAC 3921
||||||||||||
Sbjct 3421 TGGCAATTAAAC 3432
Score = 1256 bits (680), Expect = 0.0
Identities = 807/869 (93%), Gaps = 6/869 (1%)
Strand=Plus/Plus
Query 1 ATGGAGCAATCGGCTGCTCCACAACCTCCGACGATGCCGTTACCTTATCTTCCAAGCTCC 60
|||||||||||||||||||||||||||| | |||||||||||||||||||| ||| ||||
Sbjct 1 ATGGAGCAATCGGCTGCTCCACAACCTCTGCCGATGCCGTTACCTTATCTTTCAACCTCC 60
Query 61 GTTGAAGCTTCGAGAGATGATCTTCAATGTATCGGAACTATGGTGATCGTCCCACCAAAA 120
||| |||||||||||||||| ||||||||||||||||| |||| |||||||| ||||||
Sbjct 61 GTTCAAGCTTCGAGAGATGACCTTCAATGTATCGGAACGATGGAGATCGTCCGGCCAAAA 120
Query 121 CCAGTCGGTTTTCTCTGCGGCTCCATTCCTGTTCTCGCCGATAACTCGTTTCCAGCTTCT 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 121 CCAGTCGGTTTTCTCTGCGGCTCCATACCTGTTCTCGCCGATAACTCGTTTCCGGCTTCT 180
Query 181 TTTACTTCGGCTCTCCTCCCTTCTCAGGAAACCG-TCGTCACTGCTCCGAGGTACCAAAT 239
||||||||||| || || ||||||||||||| || |||| ||||||||||||||||||||
Sbjct 181 TTTACTTCGGCGCTTCTACCTTCTCAGGAAA-CGTTCGTTACTGCTCCGAGGTACCAAAT 239
Query 240 GCTTCCGATGGAGACAGATCTTAATCTTCCTCCTTTATTAACTGATTTTCCCGATAACGT 299
|||||||||||||||||||||||||| |||||||| || ||||||||||| || || ||
Sbjct 240 GCTTCCGATGGAGACAGATCTTAATCGGCCTCCTTTGTTGACTGATTTTCCGGAGAATGT 299
Query 300 TTTACCTCTCGCCGCCGTCAAGTCTAGGATCACCGGGGATATATCTAAGGAGGCTAATGT 359
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 300 TTTACCTCTCGCCGCCGTCAAGTCTAGGATCACCGGAGATATATCTAAGGAAGCTAATGT 359
Query 360 TATTACTTCCAACCTTAGTAAGAAATGTGAAGCACTTGCTGTATCT-GGTTTAGTGGAAT 418
||| |||| |||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 360 AATTGCTTCAAACCTTAGTAAGAAATGTGAAGCACTTGCTGTAT-TAGGTTTAGTGGAAT 418
Query 419 ACGGAGATGAGATTGATGTGATTGCTCCTGTTGATATTCTTAAGCAAATCTTTAAGATAC 478
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 ACGGAGATGAGATAGATGTGATTGCTCCTGTTGATATTCTTAAGCAAATCTTTAAGATAC 478
Query 479 CTTACTCGAAAGCTCGGGTTTCGATAGCGGTTCAGCGGGTTGGACAGACTCTCGTCTTGA 538
|||||||||||||||| || || ||||| |||||||| ||||| ||||||||||||||||
Sbjct 479 CTTACTCGAAAGCTCGCGTCTCCATAGCAGTTCAGCGCGTTGGGCAGACTCTCGTCTTGA 538
Query 539 ACCCTGGACCTGATGTTGAAGAGGGAGAGAAACTGATTAGGAGGCATAACAATCAACC-A 597
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
Sbjct 539 ACCCTGGACCTGATGTTGAAGAGGGAGAGAAACTGATTAGGAGGCACAGCAATCAACCCA 598
Query 598 AAGTGTACAAAAAATGTGGATGAATCTTTGTTTTTAAACTTTGCTATGCATTCAGTGAGG 657
|| ||||||||||| || || |||||||||||| |||||||||||||||||||||| |||
Sbjct 599 AA-TGTACAAAAAACGTTGACGAATCTTTGTTTCTAAACTTTGCTATGCATTCAGTAAGG 657
Query 658 ATGGAGGCGTGTGATATTCCCCCGACGCATCGTGAACATACAGAGAAACGCTCGAGTTCT 717
|||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||
Sbjct 658 ATGGAGGCGTGTGATATTCCCCCGACGCATCGCCCACATACAGAAAAACATTCGAGTTCT 717
Query 718 TCTGCTCTACCTGCTGGAGAGAACTCTCATGATAATGCTCCAGACGATAGACTTGACAAA 777
|||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 718 TCTGCTCTCCCTGCTGGAGAGAACTCTCATGATAGTGCTCCAGACGACAGACTTGACAAT 777
Query 778 CCTGCAGGGAGTAGTAAACAATCTAAACAGGATGGTTTCATTTGTGAGAAGAAGAAGAGC 837
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 778 CCTGCAGGGAGTAGTAAACAATCTAAACAGGATGGTTTCATTTGTGAAAAGAAGAAGAGC 837
Query 838 aaaaaaaaCAAGGCAGGTGTTGAGCCGGT 866
| ||||||||||||| ||||||||| |||
Sbjct 838 ATAAAAAACAAGGCACGTGTTGAGCAGGT 866
Score = 403 bits (218), Expect = 5e-111
Identities = 242/254 (95%), Gaps = 0/254 (0%)
Strand=Plus/Plus
Query 1067 AGGTTACACCTTTGACATGGCTTGAAGCTTGGCTTGACAATGTAATGGCAAGTGTGCCCG 1126
||||||||||||| || ||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 863 AGGTTACACCTTTAACCTGGCTTGAAGCCTGGCTTGACAATGTTATGGCAAGTGTGCCCG 922
Query 1127 AGTTAGCAATTTGTTATCATGAGAACGGCATCGTCCAAGGGTATGAGCTTTTGAAAACAG 1186
||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 923 AGTTAGCAATTTGCTATCATGAGAACGGTATTGTCCAAGGGTATGAGCTTTTGAAAACAG 982
Query 1187 ACGATATATTTATACTAAAAGGTATCTCTGAGGATGGTACACCTGCTTTTCATCCTCATG 1246
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 983 ACGATATATTTCTACTAAAAGGTATCTCTGAGGATGGTACACCTGCCTTTCATCCTCATG 1042
Query 1247 TTGTTCAGCAAAACGGCCTTGCTGTTTTAAGGTTTCTTCAATCAAATTGTAAAGAGGATC 1306
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 1043 TTGTTCAGCAAAACGGCCTTGCTATTTTAAGGTTTCTTCAATCAAATTGCAAAGAGGATC 1102
Query 1307 CTGGAGCATATTGG 1320
||||||| ||||||
Sbjct 1103 CTGGAGCTTATTGG 1116
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 168214472660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5