BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G35680.1
Length=876
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473693 jgi|Araly1|473693|fgenesh2_kg.1__3647__AT1G35680.1 1238 0.0
Ahg922741 jgi|Araly1|922741|scaffold_104022.1 243 2e-63
> Ahg473693 jgi|Araly1|473693|fgenesh2_kg.1__3647__AT1G35680.1
Length=858
Score = 1238 bits (670), Expect = 0.0
Identities = 795/853 (93%), Gaps = 18/853 (2%)
Strand=Plus/Plus
Query 24 CTCTCTCAGTCGAAAACAATGGCGTCTTCTTCAGCGACGCTCTCTCTCTGCTCTACTTTC 83
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 8 CTCTCTCAGGCGAAAACAATGGCGTCTTCTTCAGCGACGCTCTCTCTCTGCTCTACTTTC 67
Query 84 TCTGCTCATTGCAATGTCAATTCTCGCCGTTCTAGCACTATCCTCTGTTCTCTCTCTAAA 143
||||||||||||||||||| ||| |||||||| || |||||||| |||||||||||||||
Sbjct 68 TCTGCTCATTGCAATGTCACTTCACGCCGTTCGAGTACTATCCTGTGTTCTCTCTCTAAA 127
Query 144 CCTTCGCTTAATTTGGCTAAACCTCTGACTGGATTTCTTTCTCCTTCCACTGCGTCGACG 203
||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 128 CCTTCACTTAATTTGGCTAAACCTGTGTCTGGATTTCTTTCTCCTTCCACTGCGTCGACG 187
Query 204 TCTCGAACCGCATTCACCGTCGCTCCGAAATTCGCGGAATCAGTCGTCGAAGCTGAACCG 263
||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 188 TCTCGGACCGCATTCACCGTCGCTCCTAAATTCGCTGAATCAGTCGTCGAAGCTGAACCA 247
Query 264 GAGACTACCGATATCGAAGCTGTGGTGGTTTCCGATGTTTCGGAGGTTACTGAGGAAAAA 323
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 248 GAAACTACCGATATCGAAGCTGTGGTGGTTTCCGATGTTTCGGAAGTTACTGAGGAGAAA 307
Query 324 GCTAAACGAGAAGAGATTTTCGCTGTTATTATGGTTGGTGGACGCCAATACATAGTGTTT 383
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 308 GCTAAACGAGAAGAGATTTTCGCTGTTGTTATGGTTGGTGGACGCCAATACATAGTGTTT 367
Query 384 CCAGGGAGATATCTCTACACTCAGAGGCTAAAAGATGCAAATGTTGATGACCAGATTGTT 443
||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct 368 CCAGGGAGATATCTCTACACTCAGAGGCTGAAAGATGCAAATGTCGATGATCAGATTGTT 427
Query 444 CTCAACAAAGTGTTGCTTGTTGGAACAAAGACACACACTTACATTGGCAAGCCGGTTGTG 503
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 428 CTCAACAAAGTGTTGCTTGTTGGAACAAAGACACACACTTACATTGGCAAACCGGTTGTG 487
Query 504 ACCAATGCCACTGTACATGCTGTTGTGGAAAGTCAAGGTTTGAATGATAAAGTGGTAGTC 563
||||||||||||||||||||||| ||||||| ||| ||| ||||||| ||||||||||||
Sbjct 488 ACCAATGCCACTGTACATGCTGTAGTGGAAAATCAGGGTCTGAATGACAAAGTGGTAGTC 547
Query 564 TTCAAGTACAAGCCTAAGAAGAAGTACCGTAGAAATATCGGTCACAGACAGCCGAATACG 623
||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 548 TTCAAGTACAAGCCTAAGAAGAAATACCGTAGAAATATTGGTCACAGACAGCCAAATACG 607
Query 624 AGGATTAGGATTACCGGAATCACAGGGTATGAAGAGTATCCAGCCTCGCCCAATGTTGCA 683
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 608 AGGATTAGGATTACAGGAATCACAGGGTATGAAGAGTATCCAGCGTCGCCCAATGTTGCG 667
Query 684 GTT-----G-G---AGAAGTA-A--ATCTTTGACACAAAATGTTTCTTGAATGTTAAAAT 731
||| | | ||||||| | ||||||||||||| |||| |||||||||||||| |
Sbjct 668 GTTTAAATGTGTTGAGAAGTATAGGATCTTTGACACAATATGTATCTTGAATGTTAAA-T 726
Query 732 TTTTCTGATCTTCTCTATGTAATTTT-GTAAGGACCCTGGTCATTTCATTTCTGCTGAGA 790
|||||||||||||||||||||||||| ||||||||| | ||||||||||||| ||||||
Sbjct 727 TTTTCTGATCTTCTCTATGTAATTTTTGTAAGGACCA-GATCATTTCATTTCTTCTGAGA 785
Query 791 TTCCTTTTATTAATATGTACCT--TTT-GCCATTCTTTGATCACAAATTCTAAGTTAGTG 847
| ||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 786 TCCCTTTTATTAAAATGTACCTGCTTTTGCCATTCTTTGATCACAAATTCTAAGTTAGTG 845
Query 848 TATGAAAACTTCA 860
|| ||||||||||
Sbjct 846 TAAGAAAACTTCA 858
> Ahg922741 jgi|Araly1|922741|scaffold_104022.1
Length=2389
Score = 243 bits (131), Expect = 2e-63
Identities = 149/158 (94%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 77 TACTTTCTCTGCTCATTGCAATGTCAATTCTCGCCGTTCTAGCACTATCCTCTGTTCTCT 136
|||||||||||||||||||||||||| ||| |||||||| || |||||||| ||||||||
Sbjct 1 TACTTTCTCTGCTCATTGCAATGTCACTTCACGCCGTTCGAGTACTATCCTGTGTTCTCT 60
Query 137 CTCTAAACCTTCGCTTAATTTGGCTAAACCTCTGACTGGATTTCTTTCTCCTTCCACTGC 196
|||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 61 CTCTAAACCTTCACTTAATTTGGCTAAACCTGTGTCTGGATTTCTTTCTCCTTCCACTGC 120
Query 197 GTCGACGTCTCGAACCGCATTCACCGTCGCTCCGAAAT 234
||||||||||||||||||||||||||||||||| ||||
Sbjct 121 GTCGACGTCTCGAACCGCATTCACCGTCGCTCCTAAAT 158
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32442602367
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5