BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G35730.1
Length=1695
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473696 jgi|Araly1|473696|fgenesh2_kg.1__3650__AT1G35730.1 1472 0.0
Ahg922746 jgi|Araly1|922746|scaffold_104027.1 1077 0.0
> Ahg473696 jgi|Araly1|473696|fgenesh2_kg.1__3650__AT1G35730.1
Length=1698
Score = 1472 bits (797), Expect = 0.0
Identities = 917/975 (94%), Gaps = 7/975 (1%)
Strand=Plus/Plus
Query 725 ATG-ATCTCGTCTCCATGGTTGAGATTTATGGATCTGTGAACTTAATGGCGAAAGATCAG 783
||| |||||||||| |||||||||||||| |||||||||||| ||||||| |||||||||
Sbjct 727 ATGAATCTCGTCTCTATGGTTGAGATTTACGGATCTGTGAACCTAATGGCCAAAGATCAG 786
Query 784 ATTGGTTGCAGAGTTTTGCAGAAACTGGTCGAAGAAGGAACATTTCATGAAGCTAAGGTT 843
||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||
Sbjct 787 ATTGGTTGCAGAGTTTTGCAGAAACTGGTCGAAGAAGGAACGGTTCTTGATGCTAAGGTT 846
Query 844 ATATTACTTGCA-ATCATTGACCATGTCGTTGAACTTTCCATGGATCCTTTTGGGAATTA 902
||||| | || | |||||||| |||||||||||||| |||||||| ||||||||||||||
Sbjct 847 ATATTCCATG-AGATCATTGATCATGTCGTTGAACTCTCCATGGACCCTTTTGGGAATTA 905
Query 903 CATTGTTCAGAAGCTGTTTGATGTGAGTGATGAGGAACAGAGGACGTTGATTGTGAGTGT 962
||| || ||||||||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct 906 CATCGTCCAGAAGCTGTTAGAGGTGAGTGATGAGGAACAGAGAACGTTGATTGTGAGTGT 965
Query 963 GTTAACGTCAAATCCAAGGGAGCTTAT-CAGAATCTGTCTTAACACTTATGGGACAAGGG 1021
||||| ||||| |||||||||||||| || ||||||||| |||||||||||||||||||
Sbjct 966 ATTAACCTCAAAACCAAGGGAGCTTATCCA-AATCTGTCTCAACACTTATGGGACAAGGG 1024
Query 1022 TTGTGCAGAAGATGATTGAAACTGTGAAAACAAAACAGCAGATTGCATTGGTGAAGTCA- 1080
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 1025 TTGTGCAGAAGATGATTGAAACAGTGAAAACAAAACAGCAGATTGCATTGGTGAAGT-AC 1083
Query 1081 GGTCTCAAACCGGGGTTTCTTGCTCTTGTCAAAGATCTGAATGGGAACCATGTGATACAG 1140
||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1084 GGTCTAAAACCAGGGTTTCTTGCTCTTGTCAAAGATCTGAATGGCAACCATGTGATACAG 1143
Query 1141 AGTTGCTTGCAAACCCTTGGCCCTAATGACAATGAGTTTGTGTTAGAAGCTGCTACTAAG 1200
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1144 AGTTGCTTGCAAACCCTTGGCCCTAATGACAACAAGTTTGTGTTAGAAGCTGCTACAAAG 1203
Query 1201 TACTGTGCTGAGATTGCTATTCATCGACACGGATGCTGTGTTCTTCAATGCTGCATTTCA 1260
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 1204 TACTGTGCTGAGATTGCTATTCATCGCCACGGATGCTGTGTTCTTCAATGCTGCCTTTCA 1263
Query 1261 AACTCTGTTGGACTGCAACGTGAAAGACTCGTCGCTGAGATATCAAGAAACTCGCTTCAC 1320
||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||
Sbjct 1264 AACTCTGTTGGACTGCAACGTGAGAGACTCGTCGCTGAGATATCAAGAAACGCACTTCAC 1323
Query 1321 CTTTCTCAGGATCCTTTTGGGAACTATGTGGTGCAGTACTTAATAGATCAACAAGTTTCT 1380
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1324 CTTTCTCAGGATCCTTTTGGGAACTATGTGGTGCAGTACTTAATAGAGCAACAAGTTTCT 1383
Query 1381 GCAGTGAAGTTGCTGGTTCAGTTTAGAATGCACTACGCCGAGTTAGCTACTCAGAAGTTT 1440
|| |||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||
Sbjct 1384 GCGGTGAAGTTGCTGGTTCGGTTTAGAATGCACTACGCCGAGCTAGCAACTCAGAAGTTT 1443
Query 1441 AGTAGCCACGTGATTGAGAAGTGTCTAAGGAAGTATCCAGAGAGTCGAGCTGAGATCGTC 1500
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1444 AGTAGCCATGTGATTGAGAAGTGTCTAAGAAAGTATCCAGAGAGTCGAGCTGAGATCGTC 1503
Query 1501 CGTGAGCTCCTCTGTGTTCCAAACTTTGAATATCTTCTGCAAGATCCTTATGCGAACTAT 1560
|| || ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1504 CGCGAACTCATCTGTGTTCCAAACTTTGAATATCTTCTGCAGGATCCTTATGCGAACTAT 1563
Query 1561 GTGATCCAAACTGCTCTCTCTGTAACCAAAGGACCTGTTCGTGCTAAATTGGTGGCGAAG 1620
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1564 GTGATCCAAACTGCTCTCTCTGTAACCAAAGGACCTGTTCGTGCTAAATTGGTTGAGAAA 1623
Query 1621 GTTTACAGGTACGGGAAACTACACTCGAGCCCTTACTGCAAGAAGATTTTCTCCAAGACC 1680
|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1624 GTTTACAGGTTCGGGAAACTACGGTCGAGCCCTTACTGCAAGAAGATTTTCTCCAAGACC 1683
Query 1681 ATCTTGAAGAAGTGA 1695
|||||||||||||||
Sbjct 1684 ATCTTGAAGAAGTGA 1698
Score = 658 bits (356), Expect = 0.0
Identities = 483/543 (89%), Gaps = 14/543 (3%)
Strand=Plus/Plus
Query 1 ATGGGTTTTGGAGGTTTTAATGGAGACTTCAACTTCCGAGGAGCTTCCGATCATCGTCCT 60
|||||||||||||||||| ||||||| |||||| || || ||||||| ||||||||||||
Sbjct 1 ATGGGTTTTGGAGGTTTTCATGGAGATTTCAACATCGGACGAGCTTCAGATCATCGTCCT 60
Query 61 CTTGGTTCTGATGGGTTTTTACCGAGTCTCGACACAAACCCATTTC-T-GAAA--A---- 112
||||||||||||||||| ||| ||||||||| ||||||||||||| | ||| |
Sbjct 61 CTTGGTTCTGATGGGTTCTTAAGGAGTCTCGAGACAAACCCATTTCTTAAAAACCAGTGT 120
Query 113 -AC--CA-CAAGAGTGTTGAAGCTCTGGATTTGTGTAAAAAGCTTCACAAAATGGGTATC 168
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TACAACACCAAGAGTGTTGAAGCTCTGGATTTGTGTAAAAAGCTTCACAAAATGGGTATC 180
Query 169 TCTTGTGACATGAGTATCTGGACCAAACCCGAAGAACAGTTCCGGGTCGACCCGAGTGAG 228
||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||
Sbjct 181 TCTTGTGACATGAGTATCTGGACCAAACCGGAAGAACCGTTCCGGGTCGACCCGGGTGAG 240
Query 229 TTTGGGGCTAGAACTCTTCATGGGTCTTCTGGGTTTGACCAGAATCTCACCGGAGCTTCT 288
|||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 241 TTTGGGTCTAGAACTCTTCATGGGTCTTCTGGGTTTGACCAGAATCTGAGTGGAGCTTCT 300
Query 289 CAGATTCATGATGGGTTTCGTAACTTTTCCTCTGTTCGTCTGCAAAACAACAATTTTCAT 348
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 301 CAGATTCATGATGGGTTTCGTAACTTTTCCTCTGTTTGTCTGCAAAACAACAACTTTCAT 360
Query 349 GGAGTTTCTCCATCTCCGGGAGAGATGAGATTACTTGGCCGTCAAGATTCCTTTAACCTA 408
||||||||| | ||||| |||||||||||||| ||||| | ||||||||||||||||| |
Sbjct 361 GGAGTTTCTTCTTCTCCAGGAGAGATGAGATTGCTTGGACATCAAGATTCCTTTAACCCA 420
Query 409 AACGGATTTGAAGAGATGTTAGCTCTTAAGAATCACAGAGATTTTCTCTTAGATCAGATC 468
|| |||||||||||||| | |||||||| ||||||||||||| |||||| || || ||
Sbjct 421 TACAGATTTGAAGAGATGATGGCTCTTAAAAATCACAGAGATTATCTCTTGGACCACATT 480
Query 469 CATGAACCCATAAAGCGTCCTCCTTTTCTCAGAGGCAACGATGCTCTCATAAG-TTCGTT 527
| ||| || |||||| | |||||||||||||||| ||||||||| ||| | | ||||||
Sbjct 481 AACGAAGCCGTAAAGCCTTCTCCTTTTCTCAGAGGTAACGATGCTTTCA-AGGGTTCGTT 539
Query 528 GAT 530
|||
Sbjct 540 GAT 542
> Ahg922746 jgi|Araly1|922746|scaffold_104027.1
Length=1710
Score = 1077 bits (583), Expect = 0.0
Identities = 775/868 (89%), Gaps = 12/868 (1%)
Strand=Plus/Plus
Query 728 ATCTCGTCTCCATGGTTGAGATTTATGGATCTGTGAACTTAATGGCGAAAGATCAGATTG 787
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 652 ATCTCGTCTCCATGGTTGAGATTTACGGATCTGTGAACTTAATGGCCAAAGATCAGATTG 711
Query 788 GTTG-CAGAGTTTTGCAGAAACTGGTCGAAGAAGGAAC-ATTTCATGAAGCTAAGGTTAT 845
|||| | |||||||||||||||||||| |||||||||| | ||| |||||||||||||||
Sbjct 712 GTTGTC-GAGTTTTGCAGAAACTGGTCAAAGAAGGAACGA-TTCTTGAAGCTAAGGTTAT 769
Query 846 ATTACTTGCA-ATCATTGACCATGTCGTTGAACTTTCCATGGATCCTTTTGGGAATTACA 904
||| | || | |||||||||||||| |||||||| |||||||||||||||||||| ||||
Sbjct 770 ATTTCATG-AGATCATTGACCATGTGGTTGAACTCTCCATGGATCCTTTTGGGAACTACA 828
Query 905 TTGTTCAGAAGCTGTTTGATGTGAGTGATGAGGAACAGAGGACGTTGATTGTGAGTGTGT 964
| || ||||||||||| ||||||||||||||||||||||| || ||||||||||||| |
Sbjct 829 TCGTCCAGAAGCTGTTAGATGTGAGTGATGAGGAACAGAGAACAATGATTGTGAGTGTAT 888
Query 965 TAA-CGTCAAATCCAAGGGAGCTTATCAGAATCTGTCTTAACACTTATGGGACAAGGGTT 1023
||| | | | | |||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 889 TAACCTTGACA-CCAAGGGAGCTTATCAAAATCTGTCTCAACACTTATGGGACAAGGGTT 947
Query 1024 GTGCAGAAGATGATTGAAACTGTGAAAACAAAACAGCAGATTGCATTGGTGAAGTCAGGT 1083
||||||||||||||| |||| ||||||||||| || ||||||||||||||||||||||||
Sbjct 948 GTGCAGAAGATGATTAAAACAGTGAAAACAAAGCAACAGATTGCATTGGTGAAGTCAGGT 1007
Query 1084 CTCAAACCGGGGTTTCTTGCTCTTGTCAAAGATCTGAATGGGAACCATGTGATACAGAGT 1143
||||||||||| |||||||||||||| || ||| ||||||||| ||||||| ||||||||
Sbjct 1008 CTCAAACCGGGTTTTCTTGCTCTTGTGAACGATTTGAATGGGAGCCATGTGCTACAGAGT 1067
Query 1144 TGCTTGCAAACCCTTGGCCCTAATGACAATGAGTTTGTGTTAGAAGCTGCTACTAAGTAC 1203
|||||| | |||||| |||||||||| |||||||||| ||||| ||||| ||||||
Sbjct 1068 TGCTTGGAGTTCCTTGGTCCTAATGACACCAAGTTTGTGTTGGAAGCAGCTACAAAGTAC 1127
Query 1204 TGTGCTGAGATTGCTATTCATCGACACGGATGCTGTGTTCTTCAATGCTGCATT-TCAAA 1262
|||||||||||||| | |||||| ||||||||| |||| |||||||||||| || | |||
Sbjct 1128 TGTGCTGAGATTGCAACTCATCGCCACGGATGCCGTGTGCTTCAATGCTGCCTTAT-AAA 1186
Query 1263 CTCTGTTGGACTGCAACGTGAAAGACTCGTCGCTGAGATATCAAGAAACTCGCTTCACCT 1322
| ||||||||| |||| ||| ||||||||||||||||||| ||||||||| | ||| ||
Sbjct 1187 CACTGTTGGACCGCAAAATGATAGACTCGTCGCTGAGATATTAAGAAACTCACATCATCT 1246
Query 1323 TTCTCAGGATCCTTTTGGGAACTATGTGGTGCAGTACTTAATAGATCAACAAGTTTCTGC 1382
||| ||||||||||| ||||||||||||||||||| | ||||||| ||||||||||||||
Sbjct 1247 TTCACAGGATCCTTTCGGGAACTATGTGGTGCAGTGCCTAATAGAGCAACAAGTTTCTGC 1306
Query 1383 AGTGAAGTTGCTGGTTCAGTTTAGAATGCACTACGCCGAGTTAGCTACTCAGAAGTTTAG 1442
|||||| ||||||||||||||||||| || ||||| ||| |||| ||||||||||| ||
Sbjct 1307 AGTGAACTTGCTGGTTCAGTTTAGAACACATTACGCGGAGCTAGCGACTCAGAAGTTCAG 1366
Query 1443 TAGCCACGTGATTGAGAAGTGTCTAAGGAAGTATCCAGAGAGTCGAGCTGAGATCGTCCG 1502
|||||| || ||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1367 TAGCCATGTAATTGAGAAGTGTCTAAGAAAGTATCCAGAGAGTCGAGCTGAGATTGTCCG 1426
Query 1503 TGAGCTCCTCTGTGTTCCAAACTTTGAATATCTTCTGCAAGATCCTTATGCGAA-CTATG 1561
|||||||||| | |||||||||||||| | |||||||| |||||||||| ||| |||||
Sbjct 1427 CGAGCTCCTCTCTATTCCAAACTTTGAACAGCTTCTGCAGGATCCTTATG-GAAACTATG 1485
Query 1562 TGATCCAAACTGCTCTCTCTGTAACCAA 1589
|||||||||| |||||||||||||||||
Sbjct 1486 TGATCCAAACAGCTCTCTCTGTAACCAA 1513
Score = 255 bits (138), Expect = 6e-67
Identities = 255/305 (84%), Gaps = 33/305 (11%)
Strand=Plus/Plus
Query 1 ATGGGTTTTGGAGGTTTTAATGGAGA-CTTCAACTTCCGAGGAGCTTCCGATCATCGT-C 58
|||| ||||||||||||| ||||||| ||| |||||| || ||||||| |||||||| |
Sbjct 21 ATGGATTTTGGAGGTTTTCATGGAGATCTT-AACTTCAGACGAGCTTCAAATCATCGTCC 79
Query 59 -C-T-C----T-TGGTTCTGATGGGTTTTTACCGAGTCTCGACACAAACCCATTTCT--- 107
| | | | |||||| | ||||||||||| | |||||||||||||||||||||
Sbjct 80 TCTTCCTGATTCTGGTTCCGGTGGGTTTTTACAAAATCTCGACACAAACCCATTTCTGAA 139
Query 108 G-A--AA-A--ACCACAAGAGTGTTGAAGCTCTGGATTTGTGTAAAAAGCTTCAC-AAAA 160
| | || | || |||||||||||||||||||||||||||||| ||||||| | ||||
Sbjct 140 GAATCAATATTACAACAAGAGTGTTGAAGCTCTGGATTTGTGTAGAAAGCTT-AGTAAAA 198
Query 161 TGGGTATCTCTTGTGACATGAGTATCTGGACCAAACCCGAAGAACAGTTCCGGGTCGACC 220
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 199 TGGGTATCTCTTGTGACATGAGTATCTGGACCAAACCCGAAGAACTGTTCCGGGTCGACC 258
Query 221 CG-AGTGAGTTTGGG----G--CTAGAAC---TCTTCATGGGTCTTCTGGGTTTGACCAG 270
|| | ||| |||||| | ||||||| ||||||||||||||||||||| ||||||
Sbjct 259 CGGA-TGATTTTGGGTCTAGAGCTAGAACAACTCTTCATGGGTCTTCTGGGTTCGACCAG 317
Query 271 AATCT 275
|||||
Sbjct 318 AATCT 322
Score = 128 bits (69), Expect = 1e-28
Identities = 93/105 (89%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 1591 GGACCTGTTCGTGCTAAATTGGTGGCGAAGGTTTACAGGTACGGGAAACTACACTCGAGC 1650
||| ||||||| |||| |||||||| ||| ||||| |||| ||||| ||||| |||||
Sbjct 1584 GGAGCTGTTCGAGCTAGATTGGTGGAGAAAGTTTATAGGTTTGGGAATCTACAGTCGAGT 1643
Query 1651 CCTTACTGCAAGAAGATTTTCTCCAAGACCATCTTGAAGAAGTGA 1695
||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1644 CCTTATTGCAAGAAGATTTTCTCCAAGACCATCTTGAAGAAGTGA 1688
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63572618905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5