BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G35750.1
Length=1587
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922746 jgi|Araly1|922746|scaffold_104027.1 1332 0.0
Ahg473696 jgi|Araly1|473696|fgenesh2_kg.1__3650__AT1G35730.1 1179 0.0
> Ahg922746 jgi|Araly1|922746|scaffold_104027.1
Length=1710
Score = 1332 bits (721), Expect = 0.0
Identities = 1055/1206 (87%), Gaps = 63/1206 (5%)
Strand=Plus/Plus
Query 317 CCTCTGTTCGTGTTCAAAACAACAACTTTCATGGAGTTTCTCCTTCTCC-----AG---- 367
||||||||||| ||||||||||||||||||||||||||||| ||||||| ||
Sbjct 334 CCTCTGTTCGTCTTCAAAACAACAACTTTCATGGAGTTTCTTCTTCTCCGGGAGAGATAA 393
Query 368 GATTGCTTGGCCTA-CAAGATTCCTTTAACCCCAACGGATTTGAAGAGATGATGGCTTTT 426
|||||||||||| | ||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 394 GATTGCTTGGCC-ATCAAGATTCCTTTAACCCAAACGGATTTGAAGAGATGATGGCTATT 452
Query 427 AAAG-ATCACAAAGACTTCCTCTTAGACCACATCAATGAACCCATAAAGCGT-TCTC-CG 483
||| |||||| ||| || ||||| |||||||| |||| |||||| |||||| |||| |
Sbjct 453 -AAGAATCACAGAGATTTTCTCTTGGACCACATGAATGTACCCATTAAGCGTATCTCACT 511
Query 484 T--TTCTCAGAGGCAA-CGAT-GC-TTT--CAAGGGTTCGTTGATGTTTGAAGGAATTAG 536
| || ||| | | || || | | ||| ||| | | ||||||| |||||||||| |||
Sbjct 512 TCCTTGTCACA-G-AAGCG-TCTCTTTTAGCAACGATGCGTTGATTTTTGAAGGAAATAG 568
Query 537 -GG-T-TTCT-CA-AATCCTAG-CCGC-CATG-GAAGGT-TCTGGAGCTTCTTATCCAGA 587
|| | || | || || | || | | ||| |||||| | || || | |||
Sbjct 569 AGGTTCTTATCCAGAA-CAGAGTACTCTGATGAGAAGGTATTTGAAG-----GA---AGA 619
Query 588 TGAGCCTAAGATCAATGGTGGTTTGCCTCTGGATCTCGTCTCCATGGTTGAGATTTACGG 647
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 620 TGAGCCTAAGATCAATGGTGGTTTGCCTCTGAATCTCGTCTCCATGGTTGAGATTTACGG 679
Query 648 ATCTGTGAACTTAATGGCCAGAGATCAGATTGGGTG-CAGAGCTTTGCAGAAACTGGTCG 706
|||||||||||||||||||| |||||||||||| || | ||| ||||||||||||||||
Sbjct 680 ATCTGTGAACTTAATGGCCAAAGATCAGATTGGTTGTC-GAGTTTTGCAGAAACTGGTCA 738
Query 707 AAGAAGGAACGGTTCTTGATTCTAAGGTTATATTCCTTGAGATCATTGACCATGTCGTTG 766
||||||||||| ||||||| ||||||||||||| | |||||||||||||||||| ||||
Sbjct 739 AAGAAGGAACGATTCTTGAAGCTAAGGTTATATTTCATGAGATCATTGACCATGTGGTTG 798
Query 767 AACTTTCCATGGATCCTTTAGGGAATTACATCGTCCAGAAGCTGTTAGTTGTGTCTGATG 826
|||| |||||||||||||| ||||| |||||||||||||||||||||| |||| |||||
Sbjct 799 AACTCTCCATGGATCCTTTTGGGAACTACATCGTCCAGAAGCTGTTAGATGTGAGTGATG 858
Query 827 AGGAACAGAGAACAATGATTGTGAGTGTGTTAACGTCAAAACCAAGGGAGCTTATCAAAA 886
|||||||||||||||||||||||||||| ||||| | | ||||||||||||||||||||
Sbjct 859 AGGAACAGAGAACAATGATTGTGAGTGTATTAACCTTGACACCAAGGGAGCTTATCAAAA 918
Query 887 TCTGTCTCAACACTAATGGGACAAGGGTTATACAGAAGATGATTAAAACAGTGAAAACAA 946
|||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 919 TCTGTCTCAACACTTATGGGACAAGGGTTGTGCAGAAGATGATTAAAACAGTGAAAACAA 978
Query 947 AACAACAGATTGCATTGGTGAAGTCAGCTCTCGAACCGGGTTTTCTTGTTCTTGTCAACG 1006
| ||||||||||||||||||||||||| |||| ||||||||||||||| |||||| ||||
Sbjct 979 AGCAACAGATTGCATTGGTGAAGTCAGGTCTCAAACCGGGTTTTCTTGCTCTTGTGAACG 1038
Query 1007 ATTCT-AATGGGTA-CCATGTGCTACAGAGTTGCTTGGAGTTCCTTG-TACCTAATGACA 1063
||| | |||||| | |||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1039 ATT-TGAATGGG-AGCCATGTGCTACAGAGTTGCTTGGAGTTCCTTGGT-CCTAATGACA 1095
Query 1064 ACAAGTTTGTGGTTG-AAGCAGCTACAGAA-TATTGTGCTCA-ATTAGCAACTCATCAAT 1120
|||||||||| ||| ||||||||||| || || |||||| | ||| ||||||||||
Sbjct 1096 CCAAGTTTGTG-TTGGAAGCAGCTACA-AAGTACTGTGCTGAGATT-GCAACTCATCGCC 1152
Query 1121 ACGGATGCTATGTTCTTCAATGCAGCCTTATAAACACTGTTGGACTGCAACATGAGAGAC 1180
|||||||| ||| ||||||||| ||||||||||||||||||||| |||| |||| ||||
Sbjct 1153 ACGGATGCCGTGTGCTTCAATGCTGCCTTATAAACACTGTTGGACCGCAAAATGATAGAC 1212
Query 1181 TCGTCGCTGAGATATCAAGAGACTCACTTCGCCTTTCGCAAGATCCTTTCGGGAACTATG 1240
||||||||||||||| |||| |||||| || ||||| || |||||||||||||||||||
Sbjct 1213 TCGTCGCTGAGATATTAAGAAACTCACATCATCTTTCACAGGATCCTTTCGGGAACTATG 1272
Query 1241 TGGTGCAGTGCTTAATAGACCAACAAGTTTCTTCAGTGAACTTGCTGCTTCCA-TTTAGA 1299
||||||||||| ||||||| |||||||||||| |||||||||||||| ||| | ||||||
Sbjct 1273 TGGTGCAGTGCCTAATAGAGCAACAAGTTTCTGCAGTGAACTTGCTGGTTC-AGTTTAGA 1331
Query 1300 ACACATTGCATCG-AGCTAGCGACTCAGAAGTTCAGTAGCCATGTGATTGAGAAGTGTCT 1358
||||||| | || ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1332 ACACATTACG-CGGAGCTAGCGACTCAGAAGTTCAGTAGCCATGTAATTGAGAAGTGTCT 1390
Query 1359 AAGAAAGTATCCAGAGAGTCGAGCTGAGATCGTCCGCGAGCTCCTCTCTTAT-CCAAACT 1417
|||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||
Sbjct 1391 AAGAAAGTATCCAGAGAGTCGAGCTGAGATTGTCCGCGAGCTCCTCTCT-ATTCCAAACT 1449
Query 1418 TTGAACAGCTTCTGCAGGATCCTTATGCAAACTATGTGATCCAAACAGCTCTCTCTGTAA 1477
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1450 TTGAACAGCTTCTGCAGGATCCTTATGGAAACTATGTGATCCAAACAGCTCTCTCTGTAA 1509
Query 1478 CCAAGG 1483
||||||
Sbjct 1510 CCAAGG 1515
Score = 340 bits (184), Expect = 1e-92
Identities = 259/294 (88%), Gaps = 10/294 (3%)
Strand=Plus/Plus
Query 1 ATGGAGATTTTTAACTTCGGACAAGCTTCCGATCATCGTCGTCTTCCTGATTTTGGTTCA 60
||||||| | |||||||| ||| |||||| ||||||||| ||||||||||| ||||||
Sbjct 40 ATGGAGA-TCTTAACTTCAGACGAGCTTCAAATCATCGTCCTCTTCCTGATTCTGGTTCC 98
Query 61 GGTGGGTTTTTACAAAGTCTCGACACAAACCCATTTCTGAAGAATCAGTATTACAACAAC 120
|||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 99 GGTGGGTTTTTACAAAATCTCGACACAAACCCATTTCTGAAGAATCAATATTACAACAAG 158
Query 121 AGTGTTGAAGCTCTGGAGTTGTGTAAAAAGCTTAACAAAATGGGTATCTCTTGTGACATG 180
||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||
Sbjct 159 AGTGTTGAAGCTCTGGATTTGTGTAGAAAGCTTAGTAAAATGGGTATCTCTTGTGACATG 218
Query 181 AGTATTTGGACCAAACCCGAAGAACCATTCCGGGTCGACCCGGGTGATTTTGGG----G- 235
||||| ||||||||||||||||||| |||||||||||||||| |||||||||| |
Sbjct 219 AGTATCTGGACCAAACCCGAAGAACTGTTCCGGGTCGACCCGGATGATTTTGGGTCTAGA 278
Query 236 -CTA-AA-A-CTCTTCATGAGTCTTTTGGGTTTGACCAGAATCTCACTGGAGCT 285
||| || | ||||||||| ||||| |||||| ||||||||||| | || ||||
Sbjct 279 GCTAGAACAACTCTTCATGGGTCTTCTGGGTTCGACCAGAATCTGAATGAAGCT 332
Score = 156 bits (84), Expect = 6e-37
Identities = 98/105 (93%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 1481 AGGGAGCAGTTAGAGCTAGATTAGTGGAGAAAGTTAAAAGGTTTGGGAAACTACAGTCGA 1540
||||||| ||| |||||||||| |||||||||||| | ||||||||||| ||||||||||
Sbjct 1582 AGGGAGCTGTTCGAGCTAGATTGGTGGAGAAAGTTTATAGGTTTGGGAATCTACAGTCGA 1641
Query 1541 ATCCTTATTGCAAGAAGATTTTCTCCAAGACCATCTTGAAGAAGT 1585
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1642 GTCCTTATTGCAAGAAGATTTTCTCCAAGACCATCTTGAAGAAGT 1686
> Ahg473696 jgi|Araly1|473696|fgenesh2_kg.1__3650__AT1G35730.1
Length=1698
Score = 1179 bits (638), Expect = 0.0
Identities = 872/985 (89%), Gaps = 16/985 (2%)
Strand=Plus/Plus
Query 609 TTTGCCTCTGGATCTCGTCTCCATGGTTGAGATTTACGGATCTGTGAACTTAATGGCCAG 668
||||||| || |||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 720 TTTGCCTATGAATCTCGTCTCTATGGTTGAGATTTACGGATCTGTGAACCTAATGGCCAA 779
Query 669 AGATCAGATTGGGTGCAGAGCTTTGCAGAAACTGGTCGAAGAAGGAACGGTTCTTGATTC 728
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 780 AGATCAGATTGGTTGCAGAGTTTTGCAGAAACTGGTCGAAGAAGGAACGGTTCTTGATGC 839
Query 729 TAAGGTTATATTCCTTGAGATCATTGACCATGTCGTTGAACTTTCCATGGATCCTTTAGG 788
|||||||||||||| |||||||||||| |||||||||||||| |||||||| ||||| ||
Sbjct 840 TAAGGTTATATTCCATGAGATCATTGATCATGTCGTTGAACTCTCCATGGACCCTTTTGG 899
Query 789 GAATTACATCGTCCAGAAGCTGTTAGTTGTGTCTGATGAGGAACAGAGAACAATGATTGT 848
|||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||
Sbjct 900 GAATTACATCGTCCAGAAGCTGTTAGAGGTGAGTGATGAGGAACAGAGAACGTTGATTGT 959
Query 849 GAGTGTGTTAACGTCAAAACCAAGGGAGCTTATCAAAATCTGTCTCAACACTAATGGGAC 908
|||||| ||||| ||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 960 GAGTGTATTAACCTCAAAACCAAGGGAGCTTATCCAAATCTGTCTCAACACTTATGGGAC 1019
Query 909 AAGGGTTATACAGAAGATGATTAAAACAGTGAAAACAAAACAACAGATTGCATTGGTGAA 968
||||||| | |||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 1020 AAGGGTTGTGCAGAAGATGATTGAAACAGTGAAAACAAAACAGCAGATTGCATTGGTGAA 1079
Query 969 GTCA-GCTCTCGAACC-GGGTTTTCTTGTTCTTGTCAACGATTCT-AATGGGTACCATGT 1025
|| | | ||| |||| ||| ||||||| ||||||||| || ||| ||||| |||||||
Sbjct 1080 GT-ACGGTCTAAAACCAGGG-TTTCTTGCTCTTGTCAAAGA-TCTGAATGGCAACCATGT 1136
Query 1026 GCTACAGAGTTGCTTGGAGTTCCTTGTACCTAATGACAACAAGTTTGTGGTT-GAAGCAG 1084
| |||||||||||||| | ||||| |||||||||||||||||||| ||| ||||| |
Sbjct 1137 GATACAGAGTTGCTTGCAAACCCTTGGCCCTAATGACAACAAGTTTGT-GTTAGAAGCTG 1195
Query 1085 CTACAGAA-TATTGTGCTCA-ATTAGCAACTCATCAATACGGATGCTATGTTCTTCAATG 1142
||||| || || |||||| | ||| || | ||||| ||||||||| ||||||||||||
Sbjct 1196 CTACA-AAGTACTGTGCTGAGATT-GCTATTCATCGCCACGGATGCTGTGTTCTTCAATG 1253
Query 1143 CAGCCTTAT-AAACACTGTTGGACTGCAACATGAGAGACTCGTCGCTGAGATATCAAGAG 1201
| ||||| | |||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1254 CTGCCTT-TCAAACTCTGTTGGACTGCAACGTGAGAGACTCGTCGCTGAGATATCAAGAA 1312
Query 1202 ACTCACTTCGCCTTTCGCAAGATCCTTTCGGGAACTATGTGGTGCAGTGCTTAATAGACC 1261
|| |||||| |||||| || |||||||| ||||||||||||||||||| ||||||||| |
Sbjct 1313 ACGCACTTCACCTTTCTCAGGATCCTTTTGGGAACTATGTGGTGCAGTACTTAATAGAGC 1372
Query 1262 AACAAGTTTCTTCAGTGAACTTGCTGCTTCCATTTAGAACACATTGCATCGAGCTAGCGA 1321
||||||||||| | ||||| |||||| ||| ||||||| || | | ||||||||| |
Sbjct 1373 AACAAGTTTCTGCGGTGAAGTTGCTGGTTCGGTTTAGAATGCACTACGCCGAGCTAGCAA 1432
Query 1322 CTCAGAAGTTCAGTAGCCATGTGATTGAGAAGTGTCTAAGAAAGTATCCAGAGAGTCGAG 1381
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1433 CTCAGAAGTTTAGTAGCCATGTGATTGAGAAGTGTCTAAGAAAGTATCCAGAGAGTCGAG 1492
Query 1382 CTGAGATCGTCCGCGAGCTCCTCTCT-TATCCAAACTTTGAACAGCTTCTGCAGGATCCT 1440
|||||||||||||||| ||| ||| | | ||||||||||||| | |||||||||||||||
Sbjct 1493 CTGAGATCGTCCGCGAACTCATCTGTGT-TCCAAACTTTGAATATCTTCTGCAGGATCCT 1551
Query 1441 TATGCAAACTATGTGATCCAAACAGCTCTCTCTGTAACCAAGGGAGCAGTTAGAGCTAGA 1500
||||| ||||||||||||||||| ||||||||||||||||| ||| | ||| | |||| |
Sbjct 1552 TATGCGAACTATGTGATCCAAACTGCTCTCTCTGTAACCAAAGGACCTGTTCGTGCTAAA 1611
Query 1501 TTAGTGGAGAAAGTTAAAAGGTTTGGGAAACTACAGTCGAATCCTTATTGCAAGAAGATT 1560
|| || ||||||||| | ||||| |||||||||| ||||| ||||| ||||||||||||
Sbjct 1612 TTGGTTGAGAAAGTTTACAGGTTCGGGAAACTACGGTCGAGCCCTTACTGCAAGAAGATT 1671
Query 1561 TTCTCCAAGACCATCTTGAAGAAGT 1585
|||||||||||||||||||||||||
Sbjct 1672 TTCTCCAAGACCATCTTGAAGAAGT 1696
Score = 549 bits (297), Expect = 2e-155
Identities = 462/537 (86%), Gaps = 30/537 (6%)
Strand=Plus/Plus
Query 1 ATGGAGATTTTTAACTTCGGACAAGCTTCCGATCATCGTCGTCTTCCTGATTTTGGTTCA 60
||||||| ||| ||| |||||| |||||| |||||||||| | | | |||||||
Sbjct 20 ATGGAGA-TTTCAACATCGGACGAGCTTCAGATCATCGTC--C-T-C-----TTGGTTCT 69
Query 61 GGTGGGTTTTTACA-AAGTCTCGACACAAACCCATTTCTGAAGAATCAGTATTAC-A-A- 116
| |||||| ||| | |||||||| |||||||||||||| || || |||| |||| | |
Sbjct 70 GATGGGTTCTTA-AGGAGTCTCGAGACAAACCCATTTCTTAAAAACCAGTGTTACAACAC 128
Query 117 CAACAGTGTTGAAGCTCTGGAGTTGTGTAAAAAGCTTAACAAAATGGGTATCTCTTGTGA 176
||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 129 CAAGAGTGTTGAAGCTCTGGATTTGTGTAAAAAGCTTCACAAAATGGGTATCTCTTGTGA 188
Query 177 CATGAGTATTTGGACCAAACCCGAAGAACCATTCCGGGTCGACCCGGGTGATTTTGGGGC 236
||||||||| ||||||||||| |||||||| |||||||||||||||||||| |||||| |
Sbjct 189 CATGAGTATCTGGACCAAACCGGAAGAACCGTTCCGGGTCGACCCGGGTGAGTTTGGGTC 248
Query 237 TAAAACTCTTCATGAGTCTTTTGGGTTTGACCAGAATCTCACTGGAGCTTCTCAGATTCA 296
|| ||||||||||| ||||| |||||||||||||||||| | ||||||||||||||||||
Sbjct 249 TAGAACTCTTCATGGGTCTTCTGGGTTTGACCAGAATCTGAGTGGAGCTTCTCAGATTCA 308
Query 297 TGATGGGTTTCGTAACTTCTCCTCTGTTCGTGTTCAAAACAACAACTTTCATGGAGTTTC 356
|||||||||||||||||| ||||||||| || | ||||||||||||||||||||||||||
Sbjct 309 TGATGGGTTTCGTAACTTTTCCTCTGTTTGTCTGCAAAACAACAACTTTCATGGAGTTTC 368
Query 357 TCCTTCTCCAGGA----T----T-GCTTGGCC-TACAAGATTCCTTTAACCCCA-ACGGA 405
| ||||||||||| | | |||||| | | ||||||||||||||||| | || ||
Sbjct 369 TTCTTCTCCAGGAGAGATGAGATTGCTTGGACAT-CAAGATTCCTTTAACCC-ATACAGA 426
Query 406 TTTGAAGAGATGATGGCTTTTAAAGATCACAAAGACT-TCCTCTTAGACCACATCAATGA 464
|||||||||||||||||| ||||| |||||| ||| | || |||| |||||||| || ||
Sbjct 427 TTTGAAGAGATGATGGCTCTTAAAAATCACAGAGATTATC-TCTTGGACCACATTAACGA 485
Query 465 ACCCATAAAGCGTTCTCCGTTTCTCAGAGGCAACGATGCTTTCAAGGGTTCGTTGAT 521
| || |||||| |||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 486 AGCCGTAAAGCCTTCTCCTTTTCTCAGAGGTAACGATGCTTTCAAGGGTTCGTTGAT 542
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59458872445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5