BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G35780.1
Length=1541
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473698 jgi|Araly1|473698|fgenesh2_kg.1__3652__AT1G35780.1 2134 0.0
> Ahg473698 jgi|Araly1|473698|fgenesh2_kg.1__3652__AT1G35780.1
Length=1514
Score = 2134 bits (1155), Expect = 0.0
Identities = 1412/1529 (92%), Gaps = 46/1529 (3%)
Strand=Plus/Plus
Query 16 TTTGAAATAGAAGAAGAGTAGCTACCACTCCActcttttcgtctctctctctttttctct 75
||||||||||||||||||||||||||||||||||| ||| ||| |||||| |||||
Sbjct 2 TTTGAAATAGAAGAAGAGTAGCTACCACTCCACTC-TTT--TCT-TCTCTC----TCTCT 53
Query 76 ctATATACGTCGCCATTGTTGTTGCATTCGAAGCTTTTATAGAAGAAGTAAtctctc-tt 134
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 54 CTATATACATCGCCATTGTTATTGCATTCGAAGCTTTTATAGAAGAAGTAATCTCTCTTT 113
Query 135 tttctctatttctctgtattactttctctttttt-----ttttCGT---------GATGG 180
||||||||||||||||||||||||||| |||||| |||| || |||||
Sbjct 114 TTTCTCTATTTCTCTGTATTACTTTCTTTTTTTTGGAGGTTTTGGTGGAGAAGAAGATGG 173
Query 181 AGAAAAACACACCGGTGAGGAAACCACACATGTCGACGGCGGATCTACTCACTTGGCCGG 240
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 174 AGAAAAACACACCGGTGAGGAAACCACACATGTCGACGGCGGATCTATTGACTTGGCCGG 233
Query 241 AGAATCAACCGTTTGAGTCTCCCGCCGCCGTATCTTCTCGCTCCGCCGCCAGATCGCACC 300
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
Sbjct 234 AGAATCAACCGTTTGAGTCTCCCGCCGCCGTAGCTTCTCGCTCCGCCGCTAGATCGCATC 293
Query 301 AGCCGTCGGATGGAATAAGCAAAGTCGTATTTGGAGGACAAGTTACAGATGAAGAAGTTG 360
|||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||
Sbjct 294 AGCCGTCGGATGGAATCAGCAAAGTTGTATTTGGAGGACAAGTTACTGATGAAGAAGTTG 353
Query 361 AGAGCTTGAACAAGAGGAAGCCTTGTTCAAATTACAAGATGAAAGAGATCACAGGGAGTG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 AGAGCTTGAACAAGAGGAAGCCTTGTTCAAATTACAAGATGAAAGAGATCACAGGGAGTG 413
Query 421 GAATATTCTCTGTGTATGAAGAAAATGATGATTCTGAGTTAGCAAGTGCTAATTCCGCC- 479
|||||||||| || |||||||||||||||||||||||||||| |||||||||| ||| |
Sbjct 414 GAATATTCTCAGTTTATGAAGAAAATGATGATTCTGAGTTAGGAAGTGCTAAT-CCGGCG 472
Query 480 ACAAACGGCAAATCAAGAACTTTCCAGCAACCACCAGCAGCAATTATGAGTCACATTTCA 539
|| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 473 ACTAACGGCAAATCAAGAACATTCCAGCAACCACCAGCAGCAATTGTGAGTCACATTTCA 532
Query 540 TTTGGAGAAGAAGAGATTGTTACACCGAAAAAGCCAGCGACGGTGCCAGAAGTTGCAAAG 599
||||| ||||||||||||||||| ||||| |||||||||||||| |||||||| || |||
Sbjct 533 TTTGGGGAAGAAGAGATTGTTACCCCGAAGAAGCCAGCGACGGTACCAGAAGTGGCGAAG 592
Query 600 CAACGTGAGCTTAGTGGTACATTGGAGTATCAATCTGATGCTAAGCTTAACAAGCAATTC 659
|| |||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 593 CAGCGTGAGCTCAGTGGAACATTGGAGTATCAATCTGATGCTAAGCTTAATAAGCAATTC 652
Query 660 TCAGATGCGAAGTGTAAGGAACTAAGTGGTCATAACATCTTTGCTCCACCACCTGAGATC 719
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 653 TCAGATGCTAAGTGTAAGGAACTAAGTGGTCATAACATCTTTGCACCACCACCTGAGATT 712
Query 720 AAA-CTTCGTCCTACTGTTCGTGCTTTGGCTTATAAAGACAACTTCGACTTGGGAGAATC 778
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 AAAGCT-CGTCCTACTGTTCGTGCTTTGGCTTATAAAGACAACTTCGACTTGGGAGAATC 771
Query 779 CGATACCAAACCCGATGGGGAACTAAAGACGGCCAAGAAGATTGCGGATAGGAAGTTTAC 838
|||||||||||||||||||||| | |||||||||||||||||| |||||||||| || |
Sbjct 772 CGATACCAAACCCGATGGGGAATTGAAGACGGCCAAGAAGATTCCGGATAGGAAATTCAT 831
Query 839 AGATTTGTCGGGTAACAACGTGTTCAAAAGCGATGTTTCGTCTCCCTCTTCCGCCACGGC 898
||||||||||| |||||||| |||||| | |||| | ||||||||||||| ||||||||
Sbjct 832 GGATTTGTCGGGAAACAACGTATTCAAAGGGGATGCTACGTCTCCCTCTTCAGCCACGGC 891
Query 899 TGAGAGGCTTCTAAGCACGGCGAAGTTGAAGGAGATAAGTGGCAATGACATATTTGCTGA 958
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 892 TGAGAAGCTTCTAAGCACCGCGAAGTTGAAGGAGATAAGTGGCAATGACATATTTGCAGA 951
Query 959 TGCGAAGGCTCAGTCTCGTGACTACTTTGGCGGTGTTCGTAAACCACCAGGCGGAGAAAG 1018
||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 952 TGCAAAGGCTCAGTCTCGTGACTACTTTGGCGGCGTTCGTAAACCACCGGGCGGAGAAAG 1011
Query 1019 CAGCATTGCATTGGTCTAAACCC-C---A--A-TAATAATTATATAGCTCAAGATTAAAA 1071
||||||||||||||||||||||| | | | ||||||||||||||| ||||||||||
Sbjct 1012 CAGCATTGCATTGGTCTAAACCCACTCTACCAATAATAATTATATAGCCCAAGATTAAAG 1071
Query 1072 TTCTCTACAAAA-CTTAGAAGGTTCTAACTATTTATCTTCATTAATAGATTATGTACTTT 1130
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1072 TTCTCTACAAAAACTTAGAAGGTTCTAACTATTTATCTTCATTAATAGATAATGTACTTT 1131
Query 1131 TGGATGTTTTT--ATTTCTATATTTTCCGGTTTTGTGTGATTGAATGGTTATG-AATTGA 1187
||||||||||| |||||||| ||| |||| |||||||||||||||||||||| ||| ||
Sbjct 1132 TGGATGTTTTTTTATTTCTATGTTT-CCGGATTTGTGTGATTGAATGGTTATGCAAT-GA 1189
Query 1188 TCTGAGTTTGTTAACCGGAAAGCTAATCTGGTCTCTTAGGAATTTGTGGAGTTTGTTTGT 1247
|| ||| |||||| ||||||||||||||||||||||| || |||||||||||| |||||
Sbjct 1190 TCGGAGATTGTTA-CCGGAAAGCTAATCTGGTCTCTTTCGACTTTGTGGAGTTTATTTGT 1248
Query 1248 TTTTTGTGAGTTCAGACTTTAACTATGAGTCCATTGTTTGGGTCTGTCTCTGTATTTGTT 1307
|||| ||||||||||||||||| ||||| || |||||||||||||||||||| |||||||
Sbjct 1249 TTTT-GTGAGTTCAGACTTTAATTATGACTC-ATTGTTTGGGTCTGTCTCTGCATTTGTT 1306
Query 1308 GGGTACTTGATTGATTTTGTTGATTATTTTGGGGCTAATCTGTTATTTAAGAAAAA-GAT 1366
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1307 GGGTACTTGATTGATTCTATTGATTATTTTGGGGCTAATCTGTTATTTAAGAAAAAAGAT 1366
Query 1367 TGTGGACCGTTTC-GACAAAAGCTGTCTTACACGTTTGGTGCAGTGGATAGGACTGAGAG 1425
||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1367 TGTGGACCGTTTCTG-CAAAAGCTGTCTTACACGTTTGGTGCAGTGGGTAGGACTGAGAG 1425
Query 1426 CAGATACATAAGATTGGGAAGTCTGTTTCTTTTTTGGAAAGGAACCTTTGGCCATGGTCT 1485
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1426 CAGATACATAAGATTGGGAAGTCTGTTTCTTTTTTGGAAAGGAACCTTTGGCCCTGGTCT 1485
Query 1486 GTCCCAAATGAGAAATCTATGTATATAAT 1514
|||||||||||||||| ||||||||||||
Sbjct 1486 GTCCCAAATGAGAAATATATGTATATAAT 1514
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57706721175
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5