BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G35830.1
Length=909
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473703 jgi|Araly1|473703|fgenesh2_kg.1__3657__AT1G35830.1 1328 0.0
> Ahg473703 jgi|Araly1|473703|fgenesh2_kg.1__3657__AT1G35830.1
Length=898
Score = 1328 bits (719), Expect = 0.0
Identities = 846/907 (93%), Gaps = 9/907 (1%)
Strand=Plus/Plus
Query 1 ATGGATTCTTGTAACAGTGGAAGCTTACAATCTTCGAGCGATGATCACGAGTCTTCATCA 60
||||||||| |||||||||||||||| |||||||| |||||||| || |||||||| |||
Sbjct 1 ATGGATTCTGGTAACAGTGGAAGCTTGCAATCTTCAAGCGATGACCATGAGTCTTCCTCA 60
Query 61 ACTGGTGCTCCACAAGATCACTCCTCTTTCTTCCTCCCACCCTTCCAACCACCACCGTCT 120
||||||||||||| |||||||||||||||||||||||| || ||||||| ||||||||||
Sbjct 61 ACTGGTGCTCCACCAGATCACTCCTCTTTCTTCCTCCCTCCTTTCCAACAACCACCGTCT 120
Query 121 TCCTCCACCTACTACGGTGACCCAACAACcctctcttcctcctcctcctcctccGCTACT 180
|||||||||| |||||| ||||||||||||||||| || |||||||||||||||||||||
Sbjct 121 TCCTCCACCTTCTACGGCGACCCAACAACCCTCTCCTCTTCCTCCTCCTCCTCCGCTACT 180
Query 181 TATCTAAACTTTGTCAACAATCTCATCTCCGACGACATTCTTAACCAAACTCATctcctc 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 TATCTAAACTTTGTCAACAATCTCATCTCCGATGACATTCTTAACCAAACTCATCTCCTC 240
Query 241 cctcctcaacctccaccacctcctcctcctcctcctccctcTTCTTCCCGAAACCCTAGA 300
||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 241 CCTCCTCCACCTCCACCA---CCACCTCCTCCTCCTCCCTCTTCTTCCCGAAACCCTAGA 297
Query 301 AAACGAACAAGAGCTTCAAGAAGAGCTCCTACAACTGTTCTCACCACCGACACTTCTAAC 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 298 AAACGAACAAGAGCTTCAAGAAGAGCTCCTACCACTGTTCTCACCACCGACACTTCTAAC 357
Query 361 TTCAGAGCTATGGTTCAAGAATTCACCGGCGTCCCTGCCTCTCCTTTCTCTCACCCTTTC 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 358 TTCAGAGCTATGGTTCAAGAATTCACCGGCGTCCCTGCCTCTCCCTTCTCTCACCCTTTC 417
Query 421 TCCTCCACTACTCGCCGCTTCGATATTTTCCGATCTCCTTCCGATCCTCTTACTTATAAC 480
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 418 TCCTCCACTACTCGCCGCTTCGATATTTTCCGATCTCCCTCCGATCCTCTTACTTACAAC 477
Query 481 CCTTTTCGTCCTATCCCTCAAAAACCTTTGAATCCTTCAACATCTTCTTTACTCAACCTT 540
||||||||||||||||||||||||||||||||||||||| | |||||||| ||| ||| |
Sbjct 478 CCTTTTCGTCCTATCCCTCAAAAACCTTTGAATCCTTCATCTTCTTCTTTGCTCCACCAT 537
Query 541 CATCACCACACAACTACTTCCATGACGTTTCCTGATCTACCTCTCCCTCAAACTCACCAA 600
|||||||||||||||||||||||||| ||||| ||| | ||||||||||||| |||||||
Sbjct 538 CATCACCACACAACTACTTCCATGACCTTTCCCGATATGCCTCTCCCTCAAAATCACCAA 597
Query 601 GTTTCTACGTTCCAGTCTCTTTTATCTCATCAACATCATCATCAACCAACACTCTCCTCT 660
|| ||||| || ||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 598 GTCTCTACATTTCAGTCTCTTTTATCTCATCAACATCATCATCAAACAACACTTTCCTCT 657
Query 661 CTTCACGACCTTGACTCGATGAATCTTGGAGCATTACAACAAAATCACCATCCTACGGCT 720
||||||||||||||| | || ||||| |||||||||||||||| ||||||||| ||| ||
Sbjct 658 CTTCACGACCTTGACACAATAAATCTCGGAGCATTACAACAAACTCACCATCCAACGCCT 717
Query 721 GATGATGACAACCACCAGCTAATGATGAGGCAGTTCTCGGAGTTTGATCGCCGGACAGAA 780
|||||| | | |||||| ||||||||||||||||||||||||||||| |||||| | |||
Sbjct 718 GATGAT-A-A-CCACCATCTAATGATGAGGCAGTTCTCGGAGTTTGACCGCCGGCCGGAA 774
Query 781 AAGCCACCGGAGATTCATAATAACATTTCCTCTTCTTCTTCAGCTCCGATCAAAGGCTCT 840
||| ||||||||||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 775 AAGGCACCGGAGATTCATAATAATATCTCCTCTTCTTC---AGCTCCGATCAAAGGCTCA 831
Query 841 TCAGGTACTACTACTACTACAACAACAACAGTTGATCCCTGGATTTGCCCTACAGATTCC 900
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 832 TCAGGTACTACTACTACTACAACAACAACAGTTGATCCCTGGATTAGCCCTACAGATTCC 891
Query 901 AATAATT 907
|||||||
Sbjct 892 AATAATT 898
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33700658628
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5