BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G35830.1 Length=909 Score E Sequences producing significant alignments: (Bits) Value Ahg473703 jgi|Araly1|473703|fgenesh2_kg.1__3657__AT1G35830.1 1328 0.0 > Ahg473703 jgi|Araly1|473703|fgenesh2_kg.1__3657__AT1G35830.1 Length=898 Score = 1328 bits (719), Expect = 0.0 Identities = 846/907 (93%), Gaps = 9/907 (1%) Strand=Plus/Plus Query 1 ATGGATTCTTGTAACAGTGGAAGCTTACAATCTTCGAGCGATGATCACGAGTCTTCATCA 60 ||||||||| |||||||||||||||| |||||||| |||||||| || |||||||| ||| Sbjct 1 ATGGATTCTGGTAACAGTGGAAGCTTGCAATCTTCAAGCGATGACCATGAGTCTTCCTCA 60 Query 61 ACTGGTGCTCCACAAGATCACTCCTCTTTCTTCCTCCCACCCTTCCAACCACCACCGTCT 120 ||||||||||||| |||||||||||||||||||||||| || ||||||| |||||||||| Sbjct 61 ACTGGTGCTCCACCAGATCACTCCTCTTTCTTCCTCCCTCCTTTCCAACAACCACCGTCT 120 Query 121 TCCTCCACCTACTACGGTGACCCAACAACcctctcttcctcctcctcctcctccGCTACT 180 |||||||||| |||||| ||||||||||||||||| || ||||||||||||||||||||| Sbjct 121 TCCTCCACCTTCTACGGCGACCCAACAACCCTCTCCTCTTCCTCCTCCTCCTCCGCTACT 180 Query 181 TATCTAAACTTTGTCAACAATCTCATCTCCGACGACATTCTTAACCAAACTCATctcctc 240 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 181 TATCTAAACTTTGTCAACAATCTCATCTCCGATGACATTCTTAACCAAACTCATCTCCTC 240 Query 241 cctcctcaacctccaccacctcctcctcctcctcctccctcTTCTTCCCGAAACCCTAGA 300 ||||||| |||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 241 CCTCCTCCACCTCCACCA---CCACCTCCTCCTCCTCCCTCTTCTTCCCGAAACCCTAGA 297 Query 301 AAACGAACAAGAGCTTCAAGAAGAGCTCCTACAACTGTTCTCACCACCGACACTTCTAAC 360 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 298 AAACGAACAAGAGCTTCAAGAAGAGCTCCTACCACTGTTCTCACCACCGACACTTCTAAC 357 Query 361 TTCAGAGCTATGGTTCAAGAATTCACCGGCGTCCCTGCCTCTCCTTTCTCTCACCCTTTC 420 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 358 TTCAGAGCTATGGTTCAAGAATTCACCGGCGTCCCTGCCTCTCCCTTCTCTCACCCTTTC 417 Query 421 TCCTCCACTACTCGCCGCTTCGATATTTTCCGATCTCCTTCCGATCCTCTTACTTATAAC 480 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 418 TCCTCCACTACTCGCCGCTTCGATATTTTCCGATCTCCCTCCGATCCTCTTACTTACAAC 477 Query 481 CCTTTTCGTCCTATCCCTCAAAAACCTTTGAATCCTTCAACATCTTCTTTACTCAACCTT 540 ||||||||||||||||||||||||||||||||||||||| | |||||||| ||| ||| | Sbjct 478 CCTTTTCGTCCTATCCCTCAAAAACCTTTGAATCCTTCATCTTCTTCTTTGCTCCACCAT 537 Query 541 CATCACCACACAACTACTTCCATGACGTTTCCTGATCTACCTCTCCCTCAAACTCACCAA 600 |||||||||||||||||||||||||| ||||| ||| | ||||||||||||| ||||||| Sbjct 538 CATCACCACACAACTACTTCCATGACCTTTCCCGATATGCCTCTCCCTCAAAATCACCAA 597 Query 601 GTTTCTACGTTCCAGTCTCTTTTATCTCATCAACATCATCATCAACCAACACTCTCCTCT 660 || ||||| || ||||||||||||||||||||||||||||||||| ||||||| |||||| Sbjct 598 GTCTCTACATTTCAGTCTCTTTTATCTCATCAACATCATCATCAAACAACACTTTCCTCT 657 Query 661 CTTCACGACCTTGACTCGATGAATCTTGGAGCATTACAACAAAATCACCATCCTACGGCT 720 ||||||||||||||| | || ||||| |||||||||||||||| ||||||||| ||| || Sbjct 658 CTTCACGACCTTGACACAATAAATCTCGGAGCATTACAACAAACTCACCATCCAACGCCT 717 Query 721 GATGATGACAACCACCAGCTAATGATGAGGCAGTTCTCGGAGTTTGATCGCCGGACAGAA 780 |||||| | | |||||| ||||||||||||||||||||||||||||| |||||| | ||| Sbjct 718 GATGAT-A-A-CCACCATCTAATGATGAGGCAGTTCTCGGAGTTTGACCGCCGGCCGGAA 774 Query 781 AAGCCACCGGAGATTCATAATAACATTTCCTCTTCTTCTTCAGCTCCGATCAAAGGCTCT 840 ||| ||||||||||||||||||| || ||||||||||| |||||||||||||||||| Sbjct 775 AAGGCACCGGAGATTCATAATAATATCTCCTCTTCTTC---AGCTCCGATCAAAGGCTCA 831 Query 841 TCAGGTACTACTACTACTACAACAACAACAGTTGATCCCTGGATTTGCCCTACAGATTCC 900 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 832 TCAGGTACTACTACTACTACAACAACAACAGTTGATCCCTGGATTAGCCCTACAGATTCC 891 Query 901 AATAATT 907 ||||||| Sbjct 892 AATAATT 898 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33700658628 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5