BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G35890.1

Length=516
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg933051 jgi|Araly1|933051|scaffold_401039.1                        167    8e-41
  Ahg933048 jgi|Araly1|933048|scaffold_401036.1                        167    8e-41
  Ahg950668 jgi|Araly1|950668|scaffold_802555.1                        119    2e-26


> Ahg933051 jgi|Araly1|933051|scaffold_401039.1
Length=1013

 Score =  167 bits (90),  Expect = 8e-41
 Identities = 124/140 (89%), Gaps = 4/140 (3%)
 Strand=Plus/Plus

Query  200  GGAAGAAGATAAGTTTGAGGA--TAGTCGTCTGGAAGATTCAGAAGTATAAGAAGTCCAA  257
            ||| |||||||| ||| ||||  ||||| |||| |||||||| ||| | |||||||||||
Sbjct  509  GGACGAAGATAAATTTCAGGAGCTAGTCCTCTGCAAGATTCACAAGAAAAAGAAGTCCAA  568

Query  258  GAAGGACAAGAAGGATCATCAGCATGAAGCATCTTCTTCCTCTA-AGCCGCAGCCGATCA  316
            |||||||||||||||||||||||||||||| ||||||||||| | ||| |||||||||||
Sbjct  569  GAAGGACAAGAAGGATCATCAGCATGAAGCTTCTTCTTCCTC-AGAGCAGCAGCCGATCA  627

Query  317  AGAAAAAGAAGTCCAAGAAG  336
            |||||| ||||||||| |||
Sbjct  628  AGAAAAGGAAGTCCAAAAAG  647


> Ahg933048 jgi|Araly1|933048|scaffold_401036.1
Length=893

 Score =  167 bits (90),  Expect = 8e-41
 Identities = 124/140 (89%), Gaps = 4/140 (3%)
 Strand=Plus/Plus

Query  200  GGAAGAAGATAAGTTTGAGGA--TAGTCGTCTGGAAGATTCAGAAGTATAAGAAGTCCAA  257
            ||| |||||||| ||| ||||  ||||| |||| |||||||| ||| | |||||||||||
Sbjct  389  GGACGAAGATAAATTTCAGGAGCTAGTCCTCTGCAAGATTCACAAGAAAAAGAAGTCCAA  448

Query  258  GAAGGACAAGAAGGATCATCAGCATGAAGCATCTTCTTCCTCTA-AGCCGCAGCCGATCA  316
            |||||||||||||||||||||||||||||| ||||||||||| | ||| |||||||||||
Sbjct  449  GAAGGACAAGAAGGATCATCAGCATGAAGCTTCTTCTTCCTC-AGAGCAGCAGCCGATCA  507

Query  317  AGAAAAAGAAGTCCAAGAAG  336
            |||||| ||||||||| |||
Sbjct  508  AGAAAAGGAAGTCCAAAAAG  527


> Ahg950668 jgi|Araly1|950668|scaffold_802555.1
Length=890

 Score =  119 bits (64),  Expect = 2e-26
 Identities = 120/144 (83%), Gaps = 15/144 (10%)
 Strand=Plus/Plus

Query  200  GGAAGAAGATAAGTTTGAGGA--TAGTCGTCTGGAAGATTCAGAAGTATAAGAAGTCCAA  257
            ||| || ||||||||| ||||  ||||| |||| |||||||| ||| | || |||   ||
Sbjct  392  GGACGATGATAAGTTTCAGGAGCTAGTCCTCTGCAAGATTCACAAG-A-AA-AAG---AA  445

Query  258  GAAGGACAAGAAGGATCATCAGCATGAAG----CATCTTCTTCCTCTA-AGCCGCAGCCG  312
            |||||||||||||||||||||||||| ||    | ||||||||||| | ||| |||||||
Sbjct  446  GAAGGACAAGAAGGATCATCAGCATG-AGTCTCCTTCTTCTTCCTC-AGAGCAGCAGCCG  503

Query  313  ATCAAGAAAAAGAAGTCCAAGAAG  336
            |||||||||| |||||||||||||
Sbjct  504  ATCAAGAAAAGGAAGTCCAAGAAG  527



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18772549788


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5