BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G35910.1
Length=1402
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922759 jgi|Araly1|922759|scaffold_104040.1 1814 0.0
> Ahg922759 jgi|Araly1|922759|scaffold_104040.1
Length=1150
Score = 1814 bits (982), Expect = 0.0
Identities = 1096/1152 (95%), Gaps = 4/1152 (0%)
Strand=Plus/Plus
Query 76 ttttttttCCTAAGCCCCTAATGACAAACCATAATGCCTTAATCTCTGATGCTAAAGGCA 135
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 TTTTTTTCCCTAAGCCCCTAATGACAAACCATAATGCCTTAATCTCTGATGCAAAAGGCA 60
Query 136 GCATCGGAGTTGCGGTTAGAGTTCCAAACCAATCTCTGTTTTCTCCCGGAGGTGGCCGAT 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCATCGGAGTTGCGGTTAGAGTTCCAAACCAATCTCTGTTTTCTCCCGGAGGTGGCCGAT 120
Query 196 ACATCAGCATTCCCCGGAAGAAACTCGTGCAGAAGCTAGAGGCCGACCCGAGTCAAACCC 255
||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||
Sbjct 121 ACATCAGCATTCCCCGGAAGAAACTTGTACAGAAGCTAGAGACCGACCCGAGTCAAACCC 180
Query 256 GTATCCACACTTGGATCGAAGCCATGAGGGCTTCTTCCCCAACCCGTACCCGACCGGGGA 315
| | |||| ||||||||||||||||||||||||||||||| ||||| | |||||||||||
Sbjct 181 GAACCCACTCTTGGATCGAAGCCATGAGGGCTTCTTCCCCGACCCGAATCCGACCGGGGA 240
Query 316 ACATATC-TCCCCTCCCGGAGTCCGATGAGGAGGATGAATACTCTTCTTGGATGGCTCAA 374
||||||| || | ||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 241 ACATATCCTCTC-TCCCGGAGTCCGATGAGGAAGATGAATACTCTTCTTGGATAGCTCAA 299
Query 375 CACCCGTCAGCTTTAACCATGTTTGAAGAGATAGCTGAAGCTTCAAAAGGGAAACAAATC 434
||||| || ||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 300 CACCCATCGGCTTTAACCATGTTTGAAGAGATCGCTGAAGCTTCCAAAGGGAAACAAATC 359
Query 435 GTGATGTTTCTCGACTATGACGGTACATTATCCCCCATTGTTGAAAACCCTGATCGAGCT 494
||||||||||| |||||||||||||||||||| |||||||| |||||||| ||||| |||
Sbjct 360 GTGATGTTTCTTGACTATGACGGTACATTATCGCCCATTGTAGAAAACCCGGATCGGGCT 419
Query 495 TACATGTCTGAAGAGATGAGAGAGGCAGTGAAAGGCGTGGCTAGATATTTCCCGACCGCG 554
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 420 TACATGTCTGACGAGATGAGAGAGGCAGTGAAAGGCGTGGCTAGATATTACCCGACCGCG 479
Query 555 ATTGTCACTGGAAGATGCCGTGATAAGGTTCGTAGATTTGTGAAACTTCCCGGACTTTAC 614
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 480 ATTGTCACTGGAAGATGCCGCGATAAGGTTCGTAGATTTGTGAAACTTCCCGGACTTTAC 539
Query 615 TATGCAGGTAGCCATGGAATGGACATCAAAGGACCTTCCAAAAGAAACAAA-CATAACAA 673
||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 540 TATGCCGGTAGCCATGGAATGGACATCAAAGGACCTTCCAAAA-AAACAAAACATAACAA 598
Query 674 GAACAATAAAGGAGTTCTTTTCCAAGCGGCGAATGAGTTTTTGCCTATGATTGACAAGGT 733
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 599 GAACAATAAAGGTGTTCTTTTCCAAGCGGCGAATGAGTTCTTGCCTATGATTGACCAGGT 658
Query 734 CTCTAAGTGTCTAGTAGAGAAAATGAGAGACATAGAAGGAGCAAACGTCGAGAACAACAA 793
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 659 CTCTAAGTGTCTAGTGGAGAAAATGAGAGACATAGAAGGAGCAAACGTCGAGAATAACAA 718
Query 794 GTTTTGTGTCTCCGTACATTACCGTTGTGTTGATCAAAAGGACTGGGGATTGGTAGCGGA 853
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 719 GTTCTGTGTCTCCGTACATTACCGTTGTGTTGATCAAAAGGACTGGGGATTAGTAGCGGA 778
Query 854 ACACGTGACATCGATATTGAGTGAGTATCCGAAACTGAGGTTGACACAAGGAAGAAAAGT 913
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 779 ACACGTGACATCGATATTGAGTGAGTATCCAAAACTGAGGTTAACACAAGGAAGAAAAGT 838
Query 914 CTTAGAGATTCGACCAACCATCAAATGGGATAAAGGCAAAGCTCTCGAGTTCTTGCTCGA 973
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TTTAGAGATTCGACCAACCATCAAATGGGATAAAGGCAAAGCTCTCGAGTTCTTGCTCGA 898
Query 974 ATCCTTAGGATTCGCTAACTCTAACGATGTTTTGCCCATCTATATAGGAGATGATCGTAC 1033
||| |||||||||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct 899 ATCTTTAGGATTCGCTAACTCTAACGATGTTTTGCCCATCTACATCGGGGATGATCGTAC 958
Query 1034 GGACGAGGATGCTTTCAAGGTTTTGAGAAACAAAGGACAAGGCTTTGGTATACTTGTGTC 1093
||||||||||||||| ||||| ||| ||| |||||||||||||||||||||||||||||
Sbjct 959 GGACGAGGATGCTTTTAAGGTGCTGAAAAAGAAAGGACAAGGCTTTGGTATACTTGTGTC 1018
Query 1094 CAAAATTCCAAAGGAAACGAGTGCTACATATTCTCTACAAGAACCTTCCGAGGTAGGAGA 1153
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1019 CAAAGTTCCAAAGGAAACGAGTGCTACATATTCTCTACAACAACCTTCCGAGGTAGGAGA 1078
Query 1154 GTTTTTGCAGCGACTCGTGGAATGGAAACAAATGTCACTAAGAGGAAGATAGCCAATTTC 1213
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1079 GTTTTTGCAGCGACTCGTGGAATGGAAACAAATGTCACTAAGAGGAAGATAGCGAGTTTC 1138
Query 1214 CTGACATAAATT 1225
||||| | ||||
Sbjct 1139 CTGACTTTAATT 1150
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52412177120
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5