BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G35910.1 Length=1402 Score E Sequences producing significant alignments: (Bits) Value Ahg922759 jgi|Araly1|922759|scaffold_104040.1 1814 0.0 > Ahg922759 jgi|Araly1|922759|scaffold_104040.1 Length=1150 Score = 1814 bits (982), Expect = 0.0 Identities = 1096/1152 (95%), Gaps = 4/1152 (0%) Strand=Plus/Plus Query 76 ttttttttCCTAAGCCCCTAATGACAAACCATAATGCCTTAATCTCTGATGCTAAAGGCA 135 ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1 TTTTTTTCCCTAAGCCCCTAATGACAAACCATAATGCCTTAATCTCTGATGCAAAAGGCA 60 Query 136 GCATCGGAGTTGCGGTTAGAGTTCCAAACCAATCTCTGTTTTCTCCCGGAGGTGGCCGAT 195 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GCATCGGAGTTGCGGTTAGAGTTCCAAACCAATCTCTGTTTTCTCCCGGAGGTGGCCGAT 120 Query 196 ACATCAGCATTCCCCGGAAGAAACTCGTGCAGAAGCTAGAGGCCGACCCGAGTCAAACCC 255 ||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||| Sbjct 121 ACATCAGCATTCCCCGGAAGAAACTTGTACAGAAGCTAGAGACCGACCCGAGTCAAACCC 180 Query 256 GTATCCACACTTGGATCGAAGCCATGAGGGCTTCTTCCCCAACCCGTACCCGACCGGGGA 315 | | |||| ||||||||||||||||||||||||||||||| ||||| | ||||||||||| Sbjct 181 GAACCCACTCTTGGATCGAAGCCATGAGGGCTTCTTCCCCGACCCGAATCCGACCGGGGA 240 Query 316 ACATATC-TCCCCTCCCGGAGTCCGATGAGGAGGATGAATACTCTTCTTGGATGGCTCAA 374 ||||||| || | ||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct 241 ACATATCCTCTC-TCCCGGAGTCCGATGAGGAAGATGAATACTCTTCTTGGATAGCTCAA 299 Query 375 CACCCGTCAGCTTTAACCATGTTTGAAGAGATAGCTGAAGCTTCAAAAGGGAAACAAATC 434 ||||| || ||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 300 CACCCATCGGCTTTAACCATGTTTGAAGAGATCGCTGAAGCTTCCAAAGGGAAACAAATC 359 Query 435 GTGATGTTTCTCGACTATGACGGTACATTATCCCCCATTGTTGAAAACCCTGATCGAGCT 494 ||||||||||| |||||||||||||||||||| |||||||| |||||||| ||||| ||| Sbjct 360 GTGATGTTTCTTGACTATGACGGTACATTATCGCCCATTGTAGAAAACCCGGATCGGGCT 419 Query 495 TACATGTCTGAAGAGATGAGAGAGGCAGTGAAAGGCGTGGCTAGATATTTCCCGACCGCG 554 ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 420 TACATGTCTGACGAGATGAGAGAGGCAGTGAAAGGCGTGGCTAGATATTACCCGACCGCG 479 Query 555 ATTGTCACTGGAAGATGCCGTGATAAGGTTCGTAGATTTGTGAAACTTCCCGGACTTTAC 614 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 480 ATTGTCACTGGAAGATGCCGCGATAAGGTTCGTAGATTTGTGAAACTTCCCGGACTTTAC 539 Query 615 TATGCAGGTAGCCATGGAATGGACATCAAAGGACCTTCCAAAAGAAACAAA-CATAACAA 673 ||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||| Sbjct 540 TATGCCGGTAGCCATGGAATGGACATCAAAGGACCTTCCAAAA-AAACAAAACATAACAA 598 Query 674 GAACAATAAAGGAGTTCTTTTCCAAGCGGCGAATGAGTTTTTGCCTATGATTGACAAGGT 733 |||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 599 GAACAATAAAGGTGTTCTTTTCCAAGCGGCGAATGAGTTCTTGCCTATGATTGACCAGGT 658 Query 734 CTCTAAGTGTCTAGTAGAGAAAATGAGAGACATAGAAGGAGCAAACGTCGAGAACAACAA 793 ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 659 CTCTAAGTGTCTAGTGGAGAAAATGAGAGACATAGAAGGAGCAAACGTCGAGAATAACAA 718 Query 794 GTTTTGTGTCTCCGTACATTACCGTTGTGTTGATCAAAAGGACTGGGGATTGGTAGCGGA 853 ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 719 GTTCTGTGTCTCCGTACATTACCGTTGTGTTGATCAAAAGGACTGGGGATTAGTAGCGGA 778 Query 854 ACACGTGACATCGATATTGAGTGAGTATCCGAAACTGAGGTTGACACAAGGAAGAAAAGT 913 |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 779 ACACGTGACATCGATATTGAGTGAGTATCCAAAACTGAGGTTAACACAAGGAAGAAAAGT 838 Query 914 CTTAGAGATTCGACCAACCATCAAATGGGATAAAGGCAAAGCTCTCGAGTTCTTGCTCGA 973 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 839 TTTAGAGATTCGACCAACCATCAAATGGGATAAAGGCAAAGCTCTCGAGTTCTTGCTCGA 898 Query 974 ATCCTTAGGATTCGCTAACTCTAACGATGTTTTGCCCATCTATATAGGAGATGATCGTAC 1033 ||| |||||||||||||||||||||||||||||||||||||| || || ||||||||||| Sbjct 899 ATCTTTAGGATTCGCTAACTCTAACGATGTTTTGCCCATCTACATCGGGGATGATCGTAC 958 Query 1034 GGACGAGGATGCTTTCAAGGTTTTGAGAAACAAAGGACAAGGCTTTGGTATACTTGTGTC 1093 ||||||||||||||| ||||| ||| ||| ||||||||||||||||||||||||||||| Sbjct 959 GGACGAGGATGCTTTTAAGGTGCTGAAAAAGAAAGGACAAGGCTTTGGTATACTTGTGTC 1018 Query 1094 CAAAATTCCAAAGGAAACGAGTGCTACATATTCTCTACAAGAACCTTCCGAGGTAGGAGA 1153 |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1019 CAAAGTTCCAAAGGAAACGAGTGCTACATATTCTCTACAACAACCTTCCGAGGTAGGAGA 1078 Query 1154 GTTTTTGCAGCGACTCGTGGAATGGAAACAAATGTCACTAAGAGGAAGATAGCCAATTTC 1213 ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 1079 GTTTTTGCAGCGACTCGTGGAATGGAAACAAATGTCACTAAGAGGAAGATAGCGAGTTTC 1138 Query 1214 CTGACATAAATT 1225 ||||| | |||| Sbjct 1139 CTGACTTTAATT 1150 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52412177120 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5