BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G36000.1

Length=387
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg916655 jgi|Araly1|916655|Al_scaffold_0008_1406                    370    4e-102
  Ahg480521 jgi|Araly1|480521|fgenesh2_kg.3__3222__AT2G19510.1         320    4e-87 


> Ahg916655 jgi|Araly1|916655|Al_scaffold_0008_1406
Length=282

 Score =  370 bits (200),  Expect = 4e-102
 Identities = 258/285 (91%), Gaps = 8/285 (3%)
 Strand=Plus/Plus

Query  14   ATGGAACCTCTAGGAAACCGTCGTCCTTGCTCCGTATGTATCACCAAAAACAGAAATTGT  73
            |||||||||||||| |||| |||||||| ||| ||||||||||||| ||||| |||||||
Sbjct  1    ATGGAACCTCTAGGGAACCCTCGTCCTTACTCTGTATGTATCACCAGAAACAAAAATTGT  60

Query  74   -CCCAGATTCTGCGAATATGCAG-AATACTTTCCATATGAATTGCAAAGTCAATATGAAA  131
             |||| |  |||||||||||| | |||| ||||||||| |||||||| ||||||||||||
Sbjct  61   CCCCA-AAACTGCGAATATGC-GAAATATTTTCCATATAAATTGCAATGTCAATATGAAA  118

Query  132  GTGCTAATGAATTGTTTGGCACACCAAATATCATTACGATGATGCAG-CATGCTCCTGAA  190
            |||||||||||||||||||||| ||||||||||||| ||||||| || |||||||| |||
Sbjct  119  GTGCTAATGAATTGTTTGGCACGCCAAATATCATTAAGATGATG-AGGCATGCTCCCGAA  177

Query  191  GaaaaaaaaCAAATGCTAGCAACTTCTATAATCATGGAAGGTAATGCTTGGACAGAAG-A  249
            |||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||| |
Sbjct  178  GAAAAAAAACAAATACTAGCAACTTCCATAATCATGGAAGGTAATGCTTGGACA-AAGGA  236

Query  250  TCCTATAAGTGGTGGATTCGGTATGATTCAAAAGCTCATGTGGAA  294
            |||||||||||||||||||||| |||| |||||| ||||||||||
Sbjct  237  TCCTATAAGTGGTGGATTCGGTGTGATGCAAAAGATCATGTGGAA  281


> Ahg480521 jgi|Araly1|480521|fgenesh2_kg.3__3222__AT2G19510.1
Length=336

 Score =  320 bits (173),  Expect = 4e-87
 Identities = 258/296 (87%), Gaps = 18/296 (6%)
 Strand=Plus/Plus

Query  14   ATGGAACCTCTAGGAAACCGTCGTCCTTGCTCCGTATGTATCACCAAAAACAGAAATTGT  73
            |||||||||||||| |||| |||||||| ||| ||||||||||||| ||||| ||| |||
Sbjct  1    ATGGAACCTCTAGGGAACCATCGTCCTTACTCTGTATGTATCACCAGAAACAAAAACTGT  60

Query  74   -CCCAGATTCTGCGAATATGCAG-AATACTTTCCATATGAATTGCAAAGTCAATATGAAA  131
             |||| |  |||||||||||| | |||| ||||||||| ||||      |||||||||||
Sbjct  61   CCCCA-AAACTGCGAATATGC-GAAATATTTTCCATATAAATT------TCAATATGAAA  112

Query  132  GTGCTAATGAATTGTTTGGCACACCAAATATCATTACGATGATGCAG-CATGCTCCTGAA  190
            |||||||||||||||||||||| ||||||||||||| ||||||| || |||| ||| |||
Sbjct  113  GTGCTAATGAATTGTTTGGCACGCCAAATATCATTAAGATGATG-AGGCATGTTCCCGAA  171

Query  191  GaaaaaaaaCAAATGCTAGCAACTTCTATAATCATGGAAGGTAATGCTTGGACAGAAG-A  249
            |||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||| |
Sbjct  172  GAAAAAAAACAAATACTAGCAACTTCCATAATCATGGAAGGTAATGCTTGGACA-AAGGA  230

Query  250  TCCTATA-A---GTGGTGGATTCGGTATGATTCAAAAGCTCATGTGGAAGATTATG  301
            ||||||| |   |||||||||||||| |||| ||||||||||| ||||||||||||
Sbjct  231  TCCTATATATAAGTGGTGGATTCGGTGTGATGCAAAAGCTCATTTGGAAGATTATG  286



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13850478807


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5