BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G36050.1
Length=1733
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922760 jgi|Araly1|922760|scaffold_104041.1 1919 0.0
Ahg950830 jgi|Araly1|950830|scaffold_802717.1 224 2e-57
Ahg947532 jgi|Araly1|947532|scaffold_703761.1 224 2e-57
Ahg946896 jgi|Araly1|946896|scaffold_703125.1 224 2e-57
> Ahg922760 jgi|Araly1|922760|scaffold_104041.1
Length=1205
Score = 1919 bits (1039), Expect = 0.0
Identities = 1129/1173 (96%), Gaps = 3/1173 (0%)
Strand=Plus/Plus
Query 242 TCGTTCCCGGAGGTGTTTAAAAATGGCCGGGATCTTGAATAAATTGCGGAATCTAGATGC 301
|||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 TCGTCCCCGGAGGTGTTT--AAATGGCCGGGATCTTGAATAAACTGCGGAATCTAGATGC 58
Query 302 ATATCCTAAGATCAATGAAGATTTTTACAGCCGTACATTATCCGGCGGAGTTATCACTCT 361
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 59 ATATCCTAAGATCAATGAAGATTTCTACAGCCGTACATTATCCGGCGGAGTTATCACTCT 118
Query 362 CCTCTCCTCCGTTGTTATGTTCCTTCTCTTCTTCTCCGAGCTCCGTCTTTATCTTCATAC 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 CCTCTCCTCCGTTGTTATGTTCCTTCTCTTCTTCTCCGAGCTCCGTCTTTATCTTCATAC 178
Query 422 AGTCACCGAGACGAAGCTTATAGTAGATACTTCAAGGGGAGAGACGTTACGCATCAACTT 481
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 179 AGTCACAGAGACGAAGCTTATAGTAGATACTTCAAGGGGAGAGACGTTACGTATCAACTT 238
Query 482 TGATATTACGTTTCCTGCTCTAGCATGTTCGATTCTTAGTGTTGATGCTATGGATATTAG 541
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TGATATTACTTTTCCTGCTCTAGCATGTTCGATTCTTAGTGTTGATGCTATGGATATTAG 298
Query 542 TGGAGAGCTTCATCTTGACGTGAAACATGATATCATAAAGAGAAGATTAGATTCTAATGG 601
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TGGAGAGCTGCATCTTGACGTGAAACATGATATCATAAAGAGAAGATTAGATTCTAATGG 358
Query 602 CAACACTATAGAGGCAAGACAGGACGGAATAGGCGCTACTAAGATTGAAAACCCACTGCA 661
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 359 CAACACTATAGAAGCAAGACAGGACGGAATAGGCGCTACTAAGATTGAAAAACCACTGCA 418
Query 662 GAAACATGGTGGCAGGCTGGGACATAATGAGACTTACTGTGGTTCTTGCTATGGGGCTGA 721
|||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||
Sbjct 419 GAAACATGGTGGCAGGCTGGAACATAACGAGACTTACTGTGGTTCTTGCTATGGTGCTGA 478
Query 722 AGCGGAAGAGCATGACTGCTGCAATTCGTGTGAGGATGTTCGTGAAGCATATAGAAAGAA 781
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 479 AGCGGAAGAGCATGACTGCTGCAATTCATGTGAGGATGTTCGTGAAGCTTATAGAAAGAA 538
Query 782 AGGTTGGGGGGTTACTAATCCAGATTTGATTGACCAGTGTAAACGAGAAGGTTTTCTACA 841
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 AGGTTGGGGGGTTACAAATCCAGATTTGATTGACCAGTGTAAACGAGAAGGTTTTCTACA 598
Query 842 AAGAGTAAAGGATGAAGAAGGTGAAGGGTGTAATATATATGGGTTCTTGGAGGTCAATAA 901
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 599 AAGAGTAAAGGATGAAGAAGGTGAAGGGTGTAATATCTACGGGTTCTTGGAGGTCAATAA 658
Query 902 GGTGGCTGGGAACTTCCACTTTGCTCCTGGGAAAAGCTTTCATCAGTCGGGCGTGCATGT 961
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 659 GGTGGCTGGAAACTTCCACTTTGCTCCTGGGAAAAGCTTTCATCAGTCGGGTGTGCACGT 718
Query 962 TCACGATCTTCTTGCTTTTCAGAAAGACAGTTTTAACATAAGTCACAAGATCAATAGACT 1021
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 719 TCACGATCTTCTTGCTTTTCAGAAAGACAGTTTTAATATAAGTCATAAGATCAATAGACT 778
Query 1022 TACTTATGGAGACTACTTTCCTGGCGTCGTTAACCCTCTTGACAAAGTCGAGTGGAGTCA 1081
|||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 779 GACTTATGGGGACTACTTTCCTGGTGTTGTTAACCCTCTTGACAAAGTCGAGTGGAGTCA 838
Query 1082 AGACACACCTAATGCTATGTACCAATACTTTATCAAGGTTGTACCAACAGTATACACAGA 1141
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 839 AGACACACCTAATGCTATGTACCAATACTTCATCAAGGTTGTACCAACAGTATACACAGA 898
Query 1142 TATCAGAGGACACACAATTCAATCGAATCAGTTCTCAGTGACCGAACATGTAAAGAGCTC 1201
||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 899 TATCAGAGGACACACAATTCAGTCAAATCAGTTCTCGGTGACCGAACATGTAAAGAGCTC 958
Query 1202 AGAAGCAGGTCAACTGCAATCTTTACCTGGAGTTTTCTTCTTCTATGATCTCTCTCCAAT 1261
|||||| ||||| |||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 959 AGAAGCGGGTCAGCTGCAATCCTTACCAGGAGTTTTCTTCTTCTATGATCTCTCTCCAAT 1018
Query 1262 CAAGGTAACATTTACGGAGGAACACATATCATTCTTGCACTTCTTGACGAATGTTTGCGC 1321
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1019 CAAGGTAACATTTACGGAGGAACACATATCGTTCTTGCACTTCTTGACGAATGTTTGCGC 1078
Query 1322 CATAGTTGGAGGTGTCTTCACAGTGTCCGGGATAATAGACGCGTTTATATACCATGGTCA 1381
||||| |||||||| || ||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1079 TATAGTCGGAGGTGTTTTTACAGTATCCGGGATAATAGATGCGTTTATATACCATGGTCA 1138
Query 1382 AAAAGCTATCAAGAAGAAGATGGAAATTGTGTA 1414
||||||||||||||||||||||||||||| |||
Sbjct 1139 AAAAGCTATCAAGAAGAAGATGGAAATTG-GTA 1170
> Ahg950830 jgi|Araly1|950830|scaffold_802717.1
Length=203
Score = 224 bits (121), Expect = 2e-57
Identities = 158/175 (90%), Gaps = 6/175 (3%)
Strand=Plus/Plus
Query 474 ATC-AACTTTGATATTACG-TTTCCTGCTCTAGCATGTTCGATTCTTAGTGTTGATGCTA 531
||| || || |||| |||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 29 ATCTAAGTTCGATA-TACGTTTTCCTGCTCTACCATGTTCGATTCTTAGTGTTGATGCTA 87
Query 532 TGGATATTAGTGGAGAGCTTCATCT-TGACGTGAAACATGATATCATAAAGAGAAGATTA 590
|||||||||||||||| || | | | |||||||||||||||||| |||||||||||||||
Sbjct 88 TGGATATTAGTGGAGAACTGCTT-TGTGACGTGAAACATGATATTATAAAGAGAAGATTA 146
Query 591 GATTCTAATGGCAACACTATA-GAGGCAAGACAGGACGGAATAGGCGCTACTAAG 644
||||| |||||||||||| || ||||||||||| |||| ||||||||||||||||
Sbjct 147 GATTCAAATGGCAACACTTTAAGAGGCAAGACATGACGTAATAGGCGCTACTAAG 201
> Ahg947532 jgi|Araly1|947532|scaffold_703761.1
Length=203
Score = 224 bits (121), Expect = 2e-57
Identities = 159/176 (90%), Gaps = 8/176 (5%)
Strand=Plus/Plus
Query 474 ATC-AACTTTGATATTACG-TTTCCTGCTCTAGCATGTTCGATTCTTAGTGTTGATGCTA 531
||| || || |||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 29 ATCTAAGTTCGATA-TACGTTTTCCTGCTCTAGCATGTTCGATTCTTAGTGTTGATGCTA 87
Query 532 TGGATATTAGTGGAGAGCTTCATCTTG--ACGTGAAACATGATATCATAAAGAGAAGATT 589
|||||||||||||||| || | | ||| |||||||||||||||| ||||||||||||||
Sbjct 88 TGGATATTAGTGGAGAACTGC-T-TTGCGACGTGAAACATGATATTATAAAGAGAAGATT 145
Query 590 AGATTCTAATGGCAACACTATA-GAGGCAAGACAGGACGGAATAGGCGCTACTAAG 644
|||||| |||||||||||| || ||||||||||| |||| ||||||||||||||||
Sbjct 146 AGATTCAAATGGCAACACTTTAAGAGGCAAGACATGACGTAATAGGCGCTACTAAG 201
> Ahg946896 jgi|Araly1|946896|scaffold_703125.1
Length=203
Score = 224 bits (121), Expect = 2e-57
Identities = 158/175 (90%), Gaps = 6/175 (3%)
Strand=Plus/Plus
Query 474 ATC-AACTTTGATATTACG-TTTCCTGCTCTAGCATGTTCGATTCTTAGTGTTGATGCTA 531
||| || || |||| |||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 29 ATCTAAGTTCGATA-TACGTTTTCCTGCTCTACCATGTTCGATTCTTAGTGTTGATGCTA 87
Query 532 TGGATATTAGTGGAGAGCTTCATCT-TGACGTGAAACATGATATCATAAAGAGAAGATTA 590
|||||||||||||||| || | | | |||||||||||||||||| |||||||||||||||
Sbjct 88 TGGATATTAGTGGAGAACTGCTT-TGTGACGTGAAACATGATATTATAAAGAGAAGATTA 146
Query 591 GATTCTAATGGCAACACTATA-GAGGCAAGACAGGACGGAATAGGCGCTACTAAG 644
||||| |||||||||||| || ||||||||||| |||| ||||||||||||||||
Sbjct 147 GATTCAAATGGCAACACTTTAAGAGGCAAGACATGACGTAATAGGCGCTACTAAG 201
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65020048215
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5